Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene28 SustainPine v2.0 3092
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9T0X5_RICCO 0.0
FL-Next: tr=Dead box ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean). 0.0
Blast2go: dead-box atp-dependent rna helicase 29-like 0.0
Complete
sp_v2.0_unigene86 SustainPine v2.0 857
AutoFact: N2,N2-dimethylguanosine tRNA methyltransferase [Arabidopsis thaliana] emb|CAB87432.1| N2, N2-dimethylguanosine tRNA methyltransferases-like protein [Arabidopsis thaliana] gb|AEE79510.1| N2,N2-dimethylguanosine tRNA methyltransferase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene105 SustainPine v2.0 2020
AutoFact: mRNA cap guanine-N7 methyltransferase n=1 Tax=Picea sitchensis RepID=C0PS33_PICSI 0.0
FL-Next: sp=mRNA cap guanine-N7 methyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mrna cap guanine-n7 methyltransferase 1 0.0
Complete
sp_v2.0_unigene282 SustainPine v2.0 2299
AutoFact: pfam00665, rve, Integrase core domain 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Complete
sp_v2.0_unigene317 SustainPine v2.0 2330
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene356 SustainPine v2.0 1734
AutoFact: RecName: Full=Putative N6-adenosine-methyltransferase MT-A70-like gb|ABD28511.1| MT-A70 [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: n6-adenosine-methyltransferase mt-a70-like protein 0.0
C-terminus
sp_v2.0_unigene446 SustainPine v2.0 1364
AutoFact: APO protein 1 [Arabidopsis thaliana] gb|AEE34293.1| APO protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: apo protein 1 0.0
C-terminus
sp_v2.0_unigene534 SustainPine v2.0 1507
AutoFact: RNA-binding KH domain-containing protein [Arabidopsis thaliana] gb|AAL32764.1| RNA-binding protein-like [Arabidopsis thaliana] gb|AAP37761.1| At5g53060 [Arabidopsis thaliana] gb|AED96298.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kh domain-containing protein at4g18375-like 0.0
Putative Complete
sp_v2.0_unigene596 SustainPine v2.0 1854
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cleavage and polyadenylation specificity factor cpsf30 0.0
Putative N-terminus
sp_v2.0_unigene604 SustainPine v2.0 1271
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein rrp5 homolog 0.0
C-terminus
sp_v2.0_unigene630 SustainPine v2.0 2785
AutoFact: Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 1 n=3 Tax=Arabidopsis RepID=TRM1_ARATH 0.0
FL-Next: sp=Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable n -dimethylguanosine trna methyltransferase 1-like 0.0
Complete
sp_v2.0_unigene634 SustainPine v2.0 2577
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9R9V5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 1 0.0
Putative C-terminus
sp_v2.0_unigene649 SustainPine v2.0 1173
AutoFact: Exosome complex exonuclease rrp43, putative n=1 Tax=Ricinus communis RepID=B9T1F1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex component rrp43-like 0.0
Complete
sp_v2.0_unigene806 SustainPine v2.0 2290
AutoFact: Exosome complex exonuclease rrp45, putative n=1 Tax=Ricinus communis RepID=B9SYQ9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: 3 -5 -exoribonuclease cer7 protein 0.0
Complete
sp_v2.0_unigene932 SustainPine v2.0 1304
AutoFact: Ribonuclease n=1 Tax=Picea sitchensis RepID=D5AEE7_PICSI 0.0
FL-Next: sp=Ribonuclease; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribonuclease h2 subunit a 0.0
Complete
sp_v2.0_unigene999 SustainPine v2.0 1634
AutoFact: RNA pseudourine synthase 1 n=1 Tax=Arabidopsis thaliana RepID=PUS1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna pseudourine synthase 1-like 0.0
Complete
sp_v2.0_unigene1184 SustainPine v2.0 2134
AutoFact: smad nuclear-interacting protein 1 [Arabidopsis thaliana] sp|Q8W4D8.1|DDL_ARATH RecName: Full=FHA domain-containing protein DDL; AltName: Full=Protein DAWDLE gb|AAL32704.1| Unknown protein [Arabidopsis thaliana] gb|AAN15324.1| Unknown protein [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: fha domain-containing protein ddl 0.0
Complete
sp_v2.0_unigene1249 SustainPine v2.0 1424
AutoFact: Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex component rrp46 0.0
Complete
sp_v2.0_unigene1278 SustainPine v2.0 2150
AutoFact: Putative RNA-binding protein n=1 Tax=Solanum lycopersicum RepID=B1N661_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 40-like 0.0
Putative Complete
sp_v2.0_unigene1300 SustainPine v2.0 3428
AutoFact: DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] sp|Q9FNM7.2|RH26_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 26 gb|AED91329.1| DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna helicase 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain