Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene7258 SustainPine v2.0 550
AutoFact: WS0295.B21_F14 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0295_F14 5, mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: agenet domain-containing protein 0.0
N-terminus
sp_v2.0_unigene7321 SustainPine v2.0 1716
AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: la protein 1 0.0
Complete
sp_v2.0_unigene7411 SustainPine v2.0 1397
AutoFact: putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group] dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza s 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein rbp37 0.0
C-terminus
sp_v2.0_unigene7663 SustainPine v2.0 1554
AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AA47_PICSI 0.0
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: trna pseudouridine synthase a-like 0.0
Putative Complete
sp_v2.0_unigene7709 SustainPine v2.0 1238
AutoFact: putative ribosomal protein S5 [Oryza sativa Japonica Group] dbj|BAD08197.1| putative ribosomal protein S5 [Oryza sativa Japonica Group] dbj|BAH00782.1| unnamed protein product [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein s5 family protein 0.0
C-terminus
sp_v2.0_unigene7892 SustainPine v2.0 1039
AutoFact: RNA-binding S4 domain-containing protein [Arabidopsis thaliana] gb|AAL24321.1| Unknown protein [Arabidopsis thaliana] gb|AAN65106.1| Unknown protein [Arabidopsis thaliana] gb|AAO00774.1| Unknown protein [Arabidopsis thaliana] gb|AAP42730.1| At1g53120 [Ara 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding s4 domain-containing protein 0.0
C-terminus
sp_v2.0_unigene8016 SustainPine v2.0 1541
AutoFact: Os05g0427300 protein n=2 Tax=Oryza sativa RepID=Q0DI02_ORYSJ 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
Complete
sp_v2.0_unigene8107 SustainPine v2.0 1285
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 0.0
C-terminus
sp_v2.0_unigene8201 SustainPine v2.0 487
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 3.35577e-30
N-terminus
sp_v2.0_unigene8202 SustainPine v2.0 1582
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj|BAD15406.1| KH domain-containing protein-like [Oryza sativa Japonica Group] gb|EAY84850.1| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb|EAZ22072.1| hypothetica 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 14-like 0.0
Complete
sp_v2.0_unigene8302 SustainPine v2.0 1653
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=2 Tax=rosids RepID=B9R8U8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor u2af 38 kda subunit 0.0
Complete
sp_v2.0_unigene8303 SustainPine v2.0 1183
AutoFact: Ribosomal protein L7Ae-like [Arabidopsis thaliana] 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene8342 SustainPine v2.0 1207
AutoFact: putative hemolysin [Arabidopsis thaliana] dbj|BAB01316.1| hemolysin-like [Arabidopsis thaliana] gb|AAM65296.1| hemolysin, putative [Arabidopsis thaliana] gb|AEE77014.1| putative hemolysin [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein yqxc-like 0.0
Complete
sp_v2.0_unigene8346 SustainPine v2.0 709
AutoFact: Homeodomain-like; Uridylate kinase [Medicago truncatula] 6.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uridylate kinase 7.33348e-30
C-terminus
sp_v2.0_unigene8369 SustainPine v2.0 2625
AutoFact: Poly(A) polymerase alpha, putative n=1 Tax=Ricinus communis RepID=B9SFV5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly polymerase 0.0
Complete
sp_v2.0_unigene8371 SustainPine v2.0 1953
AutoFact: Flowering time control protein FCA, putative n=1 Tax=Ricinus communis RepID=B9RZT3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: flowering time control protein 0.0
Putative Complete
sp_v2.0_unigene8408 SustainPine v2.0 1184
AutoFact: Magnesium transporter CorA-like-like protein [Arabidopsis thaliana] gb|AAL85000.1| At2g04305/T23O15.7 [Arabidopsis thaliana] gb|AAO11621.1| At2g04305/T23O15.7 [Arabidopsis thaliana] gb|AEC05820.1| Magnesium transporter CorA-like-like protein [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene8411 SustainPine v2.0 1822
AutoFact: Chain B, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aestivum] 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
sp_v2.0_unigene8492 SustainPine v2.0 1210
AutoFact: RNA binding protein n=3 Tax=Andropogoneae RepID=B6TN55_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding protein 0.0
Putative C-terminus
sp_v2.0_unigene8505 SustainPine v2.0 1007
AutoFact: putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] gb|AEE87011.1| putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein containing kh domain protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain