Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene1379 SustainPine v2.0 1766
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein binding 0.0
Complete
sp_v2.0_unigene1496 SustainPine v2.0 1518
AutoFact: PREDICTED: dnaJ homolog subfamily B member 12-like, partial n=1 Tax=Macaca mulatta RepID=UPI0000D9C587 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dnaj homolog subfamily b member 12- partial 0.0
C-terminus
sp_v2.0_unigene1633 SustainPine v2.0 2015
AutoFact: RNA recognition motif-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SU08_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: flowering time control protein fpa 0.0
N-terminus
sp_v2.0_unigene1824 SustainPine v2.0 1308
AutoFact: Ribonuclease III-like protein [Arabidopsis thaliana] gb|AAQ62445.1| At1g55140 [Arabidopsis thaliana] dbj|BAD42926.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33190.1| Ribonuclease III-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene1855 SustainPine v2.0 1529
AutoFact: suppressor of variegation1 causing pseudouridine synthase-like protein [Arabidopsis thaliana] gb|AAM66944.1| unknown [Arabidopsis thaliana] dbj|BAC42334.1| unknown protein [Arabidopsis thaliana] gb|AEC09639.1| suppressor of variegation1 causing pseudourid 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene2003 SustainPine v2.0 2842
AutoFact: floral homeotic protein HUA1 [Arabidopsis thaliana] 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 37; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 37 0.0
Complete
sp_v2.0_unigene2401 SustainPine v2.0 2539
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
Putative Complete
sp_v2.0_unigene2426 SustainPine v2.0 1115
AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 0.0
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: chloroplastic group iia intron splicing facilitator crs1 0.0
C-terminus
sp_v2.0_unigene2445 SustainPine v2.0 1489
AutoFact: putative 30S ribosomal protein [Arabidopsis thaliana] gb|AAK43963.1|AF370148_1 unknown protein [Arabidopsis thaliana] gb|AAP04042.1| unknown protein [Arabidopsis thaliana] gb|AED93316.1| putative 30S ribosomal protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 30s ribosomal protein 0.0
C-terminus
sp_v2.0_unigene2490 SustainPine v2.0 1144
AutoFact: CRS1_YhbY domain containing protein 1.0e-18
FL-Next: sp=CRS2-associated factor 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: crs2-associated factor mitochondrial-like 0.0
C-terminus
sp_v2.0_unigene2510 SustainPine v2.0 985
AutoFact: PGAP1 domain containing protein 9.0e-05
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: uncharacterized protein loc100247423 0.0
C-terminus
sp_v2.0_unigene2621 SustainPine v2.0 2696
AutoFact: ATP-binding cassette transporter, subfamily B, member 18, group MDR/PGP protein PpABCB18 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RU14_PHYPA 0.0
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Blast2go: atp-binding cassette transporter 0.0
C-terminus
sp_v2.0_unigene2629 SustainPine v2.0 1312
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 5.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 3.90336e-34
Putative C-terminus
sp_v2.0_unigene2650 SustainPine v2.0 2067
AutoFact: Heterogeneous nuclear ribonucleoprotein A1/A3 n=2 Tax=Arabidopsis RepID=Q9FM47_ARATH 7.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
Putative Complete
sp_v2.0_unigene2654 SustainPine v2.0 3412
AutoFact: exosome complex exonuclease DIS3/RRP44 [Arabidopsis thaliana] gb|AAL09713.1| At2g17510/MJB20.7 [Arabidopsis thaliana] gb|AAL90959.1| At2g17510/MJB20.7 [Arabidopsis thaliana] gb|AAD32908.2| putative mitotic control protein dis3 [Arabidopsis thaliana] gb|AE 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: exosome complex exonuclease dis3 rrp44 0.0
Complete
sp_v2.0_unigene2757 SustainPine v2.0 1042
AutoFact: putative polyribonucleotide nucleotidyltransferase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polyribonucleotide nucleotidyltransferase 0.0
Putative C-terminus
sp_v2.0_unigene2863 SustainPine v2.0 894
AutoFact: tRNA/rRNA methyltransferase (SpoU) family protein n=3 Tax=Arabidopsis RepID=F4JP86_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: trna rrna methyltransferase family protein 0.0
Putative C-terminus
sp_v2.0_unigene2901 SustainPine v2.0 1403
AutoFact: splicing factor 3B subunit 4 [Arabidopsis thaliana] gb|AAD12222.1| putative spliceosome associated protein [Arabidopsis thaliana] gb|AAN12991.1| putative spliceosome-associated protein [Arabidopsis thaliana] gb|AEC06776.1| splicing factor 3B subunit 4 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 4-like 0.0
Putative Complete
sp_v2.0_unigene2944 SustainPine v2.0 1032
AutoFact: Ribosome-binding factor A, putative n=1 Tax=Ricinus communis RepID=B9RG62_RICCO 0.0
FL-Next: sp=Probable ribosome-binding factor A, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene2945 SustainPine v2.0 3000
AutoFact: RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana] dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana] gb|AAK96804.1| Unknown prot 7.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif family expressed 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain