Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v2.0

Name: damaged DNA binding

Term: GO:0003684  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene961 SustainPine v2.0 2399
AutoFact: DNA repair protein recA-like 3 [Arabidopsis thaliana] sp|Q9ZUP2.2|RECA3_ARATH RecName: Full=DNA repair protein recA homolog 3, mitochondrial; AltName: Full=Recombinase A homolog 3; Flags: Precursor gb|ABM06015.1| At2g19490 [Arabidopsis thaliana] gb|AEC068 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna repair protein reca homolog mitochondrial-like 0.0
Complete
sp_v2.0_unigene962 SustainPine v2.0 1729
AutoFact: DNA repair protein RAD51 homolog n=1 Tax=Solanum lycopersicum RepID=RAD51_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna repair protein rad51 homolog 0.0
Complete
sp_v2.0_unigene1894 SustainPine v2.0 3318
AutoFact: DNA mismatch repair protein MSH2, putative n=1 Tax=Ricinus communis RepID=B9RE38_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh2 0.0
Complete
sp_v2.0_unigene2919 SustainPine v2.0 1792
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
sp_v2.0_unigene3927 SustainPine v2.0 1184
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: n-glycosylase dna lyase 0.0
Putative Complete
sp_v2.0_unigene3982 SustainPine v2.0 521
AutoFact: DNA repair protein recA homolog 1, chloroplastic n=3 Tax=Arabidopsis thaliana RepID=RECAC_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna repair protein reca-like 1 0.0
Internal
sp_v2.0_unigene4980 SustainPine v2.0 1713
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 0.0
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 0.0
C-terminus
sp_v2.0_unigene5484 SustainPine v2.0 827
AutoFact: 8-oxoguanine DNA glycosylase, putative n=1 Tax=Ricinus communis RepID=B9S2W7_RICCO 2.0e-24
FL-Next: tr=8-oxoguanine DNA glycosylase, putative; Ricinus communis (Castor bean). 0.0
Blast2go: n-glycosylase dna lyase 7.42815e-29
Putative C-terminus
sp_v2.0_unigene6414 SustainPine v2.0 895
AutoFact: putative helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription-repair-coupling factor-like 0.0
Complete
sp_v2.0_unigene7300 SustainPine v2.0 723
AutoFact: putative DNA polymerase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Translesion synthesis DNA polymerase eta splice variant; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna polymerase 0.0
N-terminus
sp_v2.0_unigene9718 SustainPine v2.0 1270
AutoFact: DUF1771 multi-domain protein 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene10144 SustainPine v2.0 1677
AutoFact: Excision repair cross-complementing 1 ercc1, putative n=1 Tax=Ricinus communis RepID=B9RF25_RICCO 0.0
FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna excision repair protein ercc-1 0.0
Complete
sp_v2.0_unigene10399 SustainPine v2.0 865
AutoFact: xeroderma pigmentosum group C-complementing protein [Arabidopsis thaliana] ref|NP_001031894.1| xeroderma pigmentosum group C-complementing protein [Arabidopsis thaliana] gb|AAL32833.1| Unknown protein [Arabidopsis thaliana] gb|AAQ56802.1| At5g16630 [Arabi 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: xeroderma pigmentosum group c-complementing protein 0.0
Putative N-terminus
sp_v2.0_unigene11090 SustainPine v2.0 881
AutoFact: putative nucleotide repair protein [Oryza sativa Japonica Group] 0.0
FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna excision repair protein ercc-1-like 0.0
C-terminus
sp_v2.0_unigene11929 SustainPine v2.0 887
AutoFact: Umuc-like DNA repair protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E7T2_MICSR 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Chlorella variabilis. 0.0
Blast2go: dna polymerase iota 0.0
N-terminus
sp_v2.0_unigene11987 SustainPine v2.0 2699
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna mismatch repair protein msh6-1 0.0
Putative Complete
sp_v2.0_unigene13684 SustainPine v2.0 730
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: muts2 isoform 2 2.41504e-09
C-terminus
sp_v2.0_unigene40146 SustainPine v2.0 233
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNF5_RICCO 1.0e-16
FL-Next: sp=DNA mismatch repair protein Msh6-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-1 8.3216e-20
Internal
sp_v2.0_unigene41691 SustainPine v2.0 217
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 1.0e-24
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 4.33037e-34
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain