Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v2.0

Name: nuclear mRNA splicing, via spliceosome

Term: GO:0000398  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene25478 SustainPine v2.0 1807
AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
Complete
sp_v2.0_unigene27273 SustainPine v2.0 1009
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich splicing 0.0
C-terminus
sp_v2.0_unigene28858 SustainPine v2.0 1772
AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
N-terminus
sp_v2.0_unigene64609 SustainPine v2.0 641
AutoFact: putative splicing factor [Oryza sativa Japonica Group] gb|ABF96207.1| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] gb|EEC75348.1| hypothetical protein OsI_11773 [Oryza sativa Indica Group] gb|EEE59134.1| hypothetical prote 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: sc35-like splicing factor 33 0.0
Putative C-terminus
sp_v2.0_unigene78642 SustainPine v2.0 506
AutoFact: U2 small nuclear ribonucleoprotein A n=1 Tax=Gossypium hirsutum RepID=D6N3G9_GOSHI 1.0e-25
FL-Next: sp=U2 small nuclear ribonucleoprotein A'; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: u2 small nuclear ribonucleoprotein a 9.99278e-31
N-terminus
sp_v2.0_unigene79038 SustainPine v2.0 505
AutoFact: putative splicing factor [Oryza sativa Japonica Group] gb|ABF96207.1| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] gb|EEC75348.1| hypothetical protein OsI_11773 [Oryza sativa Indica Group] gb|EEE59134.1| hypothetical prote 8.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif family expressed 3.5424e-24
Putative N-terminus
sp_v2.0_unigene80560 SustainPine v2.0 700
AutoFact: Unassigned protein
FL-Next: Isoform Short of U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 0.0
Blast2go: u1 small nuclear ribonucleoprotein-70k 3.12438e-09
N-terminus
sp_v2.0_unigene81095 SustainPine v2.0 720
AutoFact: No apical meristem (NAM) protein [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein sombrero 0.0
Putative N-terminus
sp_v2.0_unigene84994 SustainPine v2.0 838
AutoFact: arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana] sp|P92964.2|RSP31_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP31 gb|AAL27502.1|AF439831_1 AT3g61860/F21F14_30 [Arabidopsis thaliana] gb|AAM78075.1| AT3g61860/F21F14_30 [Arab 0.0
FL-Next: sp=Arginine/serine-rich-splicing factor RSP31; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: arginine serine-rich-splicing factor rsp31-like 0.0
Complete
sp_v2.0_unigene89502 SustainPine v2.0 415
AutoFact: small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis 2.0e-26
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 2.35984e-33
N-terminus
sp_v2.0_unigene91612 SustainPine v2.0 473
AutoFact: U1 snRNP-interacting 70 kDa protein n=1 Tax=Triticum aestivum RepID=Q2QKB6_WHEAT 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 4.2188e-27
N-terminus
sp_v2.0_unigene92281 SustainPine v2.0 365
AutoFact: Putative U1 small nuclear ribonucleoprotein n=3 Tax=Oryza sativa RepID=Q94LP1_ORYSJ 8.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 1.3232e-22
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain