Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: nucleotide-excision repair

Term: GO:0006289  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene53 SustainPine v2.0 3307
AutoFact: DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] emb|CAL53063.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene462 SustainPine v2.0 1294
AutoFact: pfam08755, YccV-like, Hemimethylated DNA-binding protein YccV like 5.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uvrb uvrc motif-containing protein 0.0
C-terminus
sp_v2.0_unigene3927 SustainPine v2.0 1184
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: n-glycosylase dna lyase 0.0
Putative Complete
sp_v2.0_unigene4965 SustainPine v2.0 3460
AutoFact: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic n=3 Tax=core eudicotyledons RepID=CLPAB_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chaperone protein chloroplastic-like 0.0
Complete
sp_v2.0_unigene5484 SustainPine v2.0 827
AutoFact: 8-oxoguanine DNA glycosylase, putative n=1 Tax=Ricinus communis RepID=B9S2W7_RICCO 2.0e-24
FL-Next: tr=8-oxoguanine DNA glycosylase, putative; Ricinus communis (Castor bean). 0.0
Blast2go: n-glycosylase dna lyase 7.42815e-29
Putative C-terminus
sp_v2.0_unigene6338 SustainPine v2.0 665
AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T079_PHYPA 0.0
FL-Next: sp=DNA repair helicase UVH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair helicase uvh6 0.0
Putative N-terminus
sp_v2.0_unigene7903 SustainPine v2.0 464
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 4.09715e-14
N-terminus
sp_v2.0_unigene10118 SustainPine v2.0 763
AutoFact: nucleotide excision repair protein XP-D homolog [Arabidopsis thaliana] 0.0
FL-Next: sp=DNA repair helicase UVH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair helicase uvh6 0.0
C-terminus
sp_v2.0_unigene10168 SustainPine v2.0 1624
AutoFact: transcription initiation factor TFIIH subunit H2 [Arabidopsis thaliana] gb|AAM90909.1|AF499443_1 p44/SSL1-like protein [Arabidopsis thaliana] gb|AAC97995.1| Similar to gb|Z30094 basic transcripion factor 2, 44 kD subunit from Homo sapiens. EST gb|W43325 c 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: general transcription factor iih subunit 2-like 0.0
Putative Complete
sp_v2.0_unigene10399 SustainPine v2.0 865
AutoFact: xeroderma pigmentosum group C-complementing protein [Arabidopsis thaliana] ref|NP_001031894.1| xeroderma pigmentosum group C-complementing protein [Arabidopsis thaliana] gb|AAL32833.1| Unknown protein [Arabidopsis thaliana] gb|AAQ56802.1| At5g16630 [Arabi 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: xeroderma pigmentosum group c-complementing protein 0.0
Putative N-terminus
sp_v2.0_unigene13426 SustainPine v2.0 1523
AutoFact: RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor gb|AAA34161.1| ATP-dependent protease (CD4B) [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chaperone protein chloroplastic-like 0.0
Complete
sp_v2.0_unigene33152 SustainPine v2.0 621
AutoFact: rad1; RAD1 DNA repair protein homolog; K10848 DNA excision repair protein ERCC-4 [EC:3.1.-.-] 0.0
FL-Next: sp=DNA repair endonuclease UVH1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair endonuclease uvh1 0.0
C-terminus
sp_v2.0_unigene36518 SustainPine v2.0 347
AutoFact: putative transcription factor [Arabidopsis thaliana] 2.0e-24
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: general transcription factor iih subunit 2-like 2.38221e-44
Putative C-terminus
sp_v2.0_unigene37384 SustainPine v2.0 336
AutoFact: 5' repair endonuclease [Arabidopsis thaliana] 3.00004e-41
FL-Next: sp=DNA repair endonuclease UVH1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair endonuclease uvh1 0.0
Internal
sp_v2.0_unigene39276 SustainPine v2.0 347
AutoFact: Ultraviolet hypersensitive 1 n=1 Tax=Arabidopsis thaliana RepID=A5JEM6_ARATH 1.0e-18
FL-Next: Isoform 2 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Blast2go: dna repair endonuclease uvh1 1.82764e-21
Internal
sp_v2.0_unigene39860 SustainPine v2.0 227
AutoFact: ultraviolet hypersensitive 1 [Arabidopsis thaliana] 3.0e-10
FL-Next: Isoform 2 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Blast2go: dna repair endonuclease uvh1 8.38969e-13
Internal
sp_v2.0_unigene46520 SustainPine v2.0 517
AutoFact: ultraviolet hypersensitive 1 [Arabidopsis thaliana] 0.0
FL-Next: Isoform 2 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Blast2go: dna repair endonuclease uvh1 0.0
Internal
sp_v2.0_unigene53560 SustainPine v2.0 266
AutoFact: 5' repair endonuclease [Arabidopsis thaliana] 4.0e-32
FL-Next: Isoform 2 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Blast2go: dna repair endonuclease uvh1 4.82607e-42
Internal
sp_v2.0_unigene57079 SustainPine v2.0 144
AutoFact: 5' repair endonuclease [Arabidopsis thaliana] 1.0e-08
FL-Next: Isoform 3 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Blast2go: dna repair endonuclease uvh1 6.27712e-13
Internal
sp_v2.0_unigene62197 SustainPine v2.0 460
AutoFact: DNA polymerase lambda, putative n=1 Tax=Ricinus communis RepID=B9S2K3_RICCO 7.0e-23
FL-Next: tr=DNA polymerase lambda, putative; Ricinus communis (Castor bean). 0.0
Blast2go: dna polymerase lambda 5.10125e-27
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain