Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: production of ta-siRNAs involved in RNA interference

Term: GO:0010267  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene1466 SustainPine v2.0 1172
AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endoribonuclease dicer 0.0
Complete
sp_v2.0_unigene2182 SustainPine v2.0 1507
AutoFact: RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RP51_RICCO 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
sp_v2.0_unigene2324 SustainPine v2.0 2563
AutoFact: THO complex subunit 1 [Arabidopsis thaliana] gb|AAL11560.1|AF424566_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb|AAL16253.1|AF428323_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb|AED91456.1| THO complex subunit 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: tho complex subunit 1-like 0.0
Complete
sp_v2.0_unigene2672 SustainPine v2.0 1592
AutoFact: THO complex subunit 6 [Arabidopsis thaliana] sp|Q8L4M1.1|DWA1_ARATH RecName: Full=WD repeat-containing protein DWA1; AltName: Full=Protein DWD HYPERSENSITIVE TO ABA 1 gb|AAM20569.1| putative WD-40 repeat protein [Arabidopsis thaliana] gb|AAM91279.1| putat 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd-40 repeat protein 0.0
Putative Complete
sp_v2.0_unigene4977 SustainPine v2.0 608
AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 8.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein dicer-like 2 0.0
C-terminus
sp_v2.0_unigene5016 SustainPine v2.0 1412
AutoFact: putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] 0.0
FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
Internal
sp_v2.0_unigene5674 SustainPine v2.0 1997
AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9S921_RICCO 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein argonaute 7-like 0.0
C-terminus
sp_v2.0_unigene5830 SustainPine v2.0 2134
AutoFact: Arsenite-resistance protein, putative n=1 Tax=Ricinus communis RepID=B9S6M6_RICCO 0.0
FL-Next: sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: serrate rna effector molecule-like 0.0
C-terminus
sp_v2.0_unigene5835 SustainPine v2.0 2496
AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endoribonuclease dicer 0.0
Putative Complete
sp_v2.0_unigene5849 SustainPine v2.0 613
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: endoribonuclease dicer homolog 1-like 0.0
Internal
sp_v2.0_unigene6067 SustainPine v2.0 218
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HYI3_POPTR 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein dicer-like 2 4.83694e-39
Internal
sp_v2.0_unigene7804 SustainPine v2.0 1667
AutoFact: THO complex subunit 3 [Arabidopsis thaliana] dbj|BAB09295.1| unnamed protein product [Arabidopsis thaliana] gb|AAM13119.1| unknown protein [Arabidopsis thaliana] gb|AAN15493.1| unknown protein [Arabidopsis thaliana] gb|AED96724.1| THO complex subunit 3 [A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene10111 SustainPine v2.0 1070
AutoFact: RNA-dependent RNA polymerase 6 n=2 Tax=Arabidopsis RepID=RDR6_ARATH 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
sp_v2.0_unigene11861 SustainPine v2.0 1441
AutoFact: Argonaute protein group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HXP0_POPTR 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein argonaute 7-like 0.0
Internal
sp_v2.0_unigene11869 SustainPine v2.0 856
AutoFact: RNA-dependent RNA polymerase 6 n=1 Tax=Cucumis sativus RepID=E9NWL0_CUCSA 2.0e-38
FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna-dependent rna polymerase 6 7.77721e-43
Putative N-terminus
sp_v2.0_unigene12592 SustainPine v2.0 518
AutoFact: Endoribonuclease Dicer homolog 3b n=2 Tax=Oryza sativa RepID=DCL3B_ORYSJ 6.0e-10
FL-Next: sp=Endoribonuclease Dicer homolog 3b; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: endoribonuclease dicer 4.40811e-11
Putative N-terminus
sp_v2.0_unigene13594 SustainPine v2.0 266
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] 7.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 4 8.79726e-22
N-terminus
sp_v2.0_unigene13742 SustainPine v2.0 779
AutoFact: serrate RNA effector molecule [Arabidopsis thaliana] sp|Q9ZVD0.2|SRRT_ARATH RecName: Full=Serrate RNA effector molecule gb|AAK63206.1|AF311221_1 C2H2 zinc-finger protein SERRATE [Arabidopsis thaliana] gb|AAL16137.1|AF428305_1 At2g27100/T20P8.15 [Arabidops 0.0
FL-Next: sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: serrate rna effector molecule-like 0.0
Internal
sp_v2.0_unigene14611 SustainPine v2.0 807
AutoFact: Protein argonaute 7 n=3 Tax=Oryza sativa RepID=AGO7_ORYSJ 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein argonaute 7-like 2.24208e-44
Complete
sp_v2.0_unigene19522 SustainPine v2.0 362
AutoFact: Dicer-like 4 n=1 Tax=Physcomitrella patens RepID=B3SRQ1_9BRYO 6.0e-12
FL-Next: sp=Dicer-like protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dsrna-specific nuclease dicer and related ribonuclease 6.85019e-14
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain