Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene1606 SustainPine v2.0 1048
AutoFact: DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] sp|Q8RXS6.2|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gb|AEE79637.1| DNA helicase INO80 complex-like 1 [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Putative N-terminus
sp_v2.0_unigene1625 SustainPine v2.0 983
AutoFact: putative transcription factor [Oryza sativa Japonica Group] gb|ABB47886.2| expressed protein [Oryza sativa Japonica Group] 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.25609e-43
N-terminus
sp_v2.0_unigene1660 SustainPine v2.0 1975
AutoFact: R2R3-Myb4 transcription factor (Fragment) n=1 Tax=Pinus pinaster RepID=B1PPT6_PINPS 0.0
FL-Next: tr=R2R3-MYB transcription factor MYB4; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: transcription factor myb46-like 0.0
Putative Complete
sp_v2.0_unigene1684 SustainPine v2.0 842
AutoFact: DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Os05g0160800 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna polymerase epsilon subunit 2-like 0.0
C-terminus
sp_v2.0_unigene1688 SustainPine v2.0 1198
AutoFact: R2R3-Myb5 transcription factor (Fragment) n=2 Tax=Pinus RepID=B1PPT8_PINPS 0.0
FL-Next: tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: myb-like protein 0.0
Complete
sp_v2.0_unigene1727 SustainPine v2.0 2446
AutoFact: TATA binding protein associated factor n=1 Tax=Solanum tuberosum RepID=Q3LHL0_SOLTU 7.0e-37
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: transcription initiation factor tfiid subunit a 4.14924e-42
Complete
sp_v2.0_unigene1730 SustainPine v2.0 1510
AutoFact: [R] COG0613 Predicted metal-dependent phosphoesterases (PHP family) 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein trph-like 0.0
Complete
sp_v2.0_unigene1796 SustainPine v2.0 1653
AutoFact: MYBPA1 protein n=2 Tax=Vitis vinifera RepID=A4F4L3_VITVI 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: myb-like transcription factor 2 1.06543e-28
Putative N-terminus
sp_v2.0_unigene1800 SustainPine v2.0 1080
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
Complete
sp_v2.0_unigene1833 SustainPine v2.0 487
AutoFact: Transcription factor viviparous 1 n=1 Tax=Picea abies RepID=Q9FVK1_PICAB 6.0e-35
FL-Next: tr=Transcription factor viviparous 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: af175576_1transcription factor viviparous 1 9.1965e-40
C-terminus
sp_v2.0_unigene1834 SustainPine v2.0 828
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SQC7_RICCO 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 1.45455e-42
C-terminus
sp_v2.0_unigene1840 SustainPine v2.0 1910
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 0.0
FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
Blast2go: fact complex subunit ssrp1 0.0
N-terminus
sp_v2.0_unigene1862 SustainPine v2.0 2048
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh62-like 0.0
C-terminus
sp_v2.0_unigene1864 SustainPine v2.0 2066
AutoFact: genomes uncoupled 1 protein [Arabidopsis thaliana] sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gb|AAD26479.1| unknown protein [Arabidopsis thaliana] gb|AEC08542.1| genomes un 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
C-terminus
sp_v2.0_unigene1872 SustainPine v2.0 1098
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 0.0
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone 2 0.0
Complete
sp_v2.0_unigene1918 SustainPine v2.0 1836
AutoFact: MYB transcription factor [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: myb transcription factor 0.0
Putative Complete
sp_v2.0_unigene1927 SustainPine v2.0 729
AutoFact: APETALA2-like protein 1 [Pinus thunbergii] 1.0e-22
FL-Next: tr=APETALA2-like protein 1; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Blast2go: floral homeotic protein apetala partial 1.98787e-28
Internal
sp_v2.0_unigene1944 SustainPine v2.0 1794
AutoFact: DUF3598 domain containing protein 4.0e-08
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene1957 SustainPine v2.0 1307
AutoFact: Mitotic spindle checkpoint protein MAD2 n=4 Tax=Andropogoneae RepID=MAD2_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mitotic spindle checkpoint protein mad2 0.0
Complete
sp_v2.0_unigene1959 SustainPine v2.0 2148
AutoFact: SWI/SNF complex subunit SWI3B [Arabidopsis thaliana] sp|Q84JG2.1|SWI3B_ARATH RecName: Full=SWI/SNF complex subunit SWI3B; Short=AtSWI3B; AltName: Full=Transcription regulatory protein SWI3B gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsis 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swi snf complex subunit swi3b 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain