Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene604 SustainPine v2.0 1271
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein rrp5 homolog 0.0
C-terminus
sp_v2.0_unigene800 SustainPine v2.0 2765
AutoFact: PREDICTED: similar to splicing factor, putative n=1 Tax=Vitis vinifera RepID=UPI0001983CB2 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: splicing factor 3b subunit 1-like 0.0
C-terminus
sp_v2.0_unigene1105 SustainPine v2.0 1603
AutoFact: putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 0.0
Complete
sp_v2.0_unigene1162 SustainPine v2.0 1468
AutoFact: Nuclear pre-mRNA splicing factor, component of splicing factor 3b (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8JHC1_CHLRE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 0.0
N-terminus
sp_v2.0_unigene1235 SustainPine v2.0 2360
AutoFact: cell cycle control crn (crooked neck) protein-like [Arabidopsis thaliana] 0.0
FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Blast2go: pre-mrna-splicing factor clf1 0.0
C-terminus
sp_v2.0_unigene1481 SustainPine v2.0 1183
AutoFact: putative receptor-like protein kinase [Arabidopsis thaliana] 4.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lrr receptor-like serine threonine-protein kinase fei 0.0
C-terminus
sp_v2.0_unigene2572 SustainPine v2.0 953
AutoFact: endoribonuclease/protein kinase IRE1-like protein [Arabidopsis thaliana] gb|AAK15470.1|AF308596_1 endoribonuclease/protein kinase IRE1-like protein [Arabidopsis thaliana] dbj|BAB63367.1| Ire1 homolog-2 [Arabidopsis thaliana] gb|AAD32909.2| putative protei 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: endoribonuclease protein kinase ire1 8.54202e-37
C-terminus
sp_v2.0_unigene3678 SustainPine v2.0 2413
AutoFact: RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene3997 SustainPine v2.0 1455
AutoFact: uridylate kinase [Arabidopsis thaliana] dbj|BAB01794.1| unnamed protein product [Arabidopsis thaliana] gb|AAK92763.1| putative uridylate kinase [Arabidopsis thaliana] gb|AAM14100.1| putative uridylate kinase [Arabidopsis thaliana] gb|AEE76131.1| uridylate 0.0
FL-Next: tr=Aspartate/glutamate/uridylate kinase family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: uridylate kinase 0.0
Complete
sp_v2.0_unigene4176 SustainPine v2.0 1836
AutoFact: Intron maturase, type II family protein [Arabidopsis thaliana] dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] gb|AED95448.1| Intron maturase, type II family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized mitochondrial protein ymf11-like 0.0
C-terminus
sp_v2.0_unigene4251 SustainPine v2.0 1736
AutoFact: ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich splicing 0.0
Complete
sp_v2.0_unigene4393 SustainPine v2.0 1994
AutoFact: Helicase, putative n=1 Tax=Ricinus communis RepID=B9SPB9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: superkiller viralicidic activity 2-like 2-like 0.0
N-terminus
sp_v2.0_unigene4812 SustainPine v2.0 1993
AutoFact: Ferrochelatase n=1 Tax=Nicotiana tabacum RepID=Q949G2_TOBAC 0.0
FL-Next: sp=Ferrochelatase-2, chloroplastic; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: ferrochelatase- chloroplastic-like 0.0
C-terminus
sp_v2.0_unigene4974 SustainPine v2.0 1060
AutoFact: Type II intron maturase family protein n=4 Tax=Andropogoneae RepID=B6SWF1_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized mitochondrial protein ymf11-like 0.0
Internal
sp_v2.0_unigene6053 SustainPine v2.0 506
AutoFact: WS01017.B21.1_P02 SS-R-N-A-11 Picea sitchensis cDNA clone WS01017_P02 3', mRNA sequence. 0.0
FL-Next: tr=Os03g0270200 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 2.90775e-27
N-terminus
sp_v2.0_unigene6274 SustainPine v2.0 1410
AutoFact: Lariat debranching enzyme [Arabidopsis thaliana] sp|Q94K01.1|DBR1_ARATH RecName: Full=Lariat debranching enzyme; Short=AtDBR1 gb|AAK43876.1|AF370499_1 RNA lariat debranching enzyme - like protein [Arabidopsis thaliana] gb|ABI54338.1| At4g31770 [Arabidopsi 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lariat debranching enzyme 0.0
N-terminus
sp_v2.0_unigene6585 SustainPine v2.0 1522
AutoFact: [A] COG5182 Splicing factor 3b, subunit 2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 2 0.0
N-terminus
sp_v2.0_unigene8346 SustainPine v2.0 709
AutoFact: Homeodomain-like; Uridylate kinase [Medicago truncatula] 6.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uridylate kinase 7.33348e-30
C-terminus
sp_v2.0_unigene9503 SustainPine v2.0 1112
AutoFact: PREDICTED: similar to splicing factor, putative n=1 Tax=Vitis vinifera RepID=UPI0001983CB2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b 0.0
Putative Complete
sp_v2.0_unigene10001 SustainPine v2.0 3109
AutoFact: [R] COG2319 FOG: WD40 repeat 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: flowering time control protein fy 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain