Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene10353 SustainPine v2.0 662
AutoFact: uridylate kinase [Arabidopsis thaliana] dbj|BAB01794.1| unnamed protein product [Arabidopsis thaliana] gb|AAK92763.1| putative uridylate kinase [Arabidopsis thaliana] gb|AAM14100.1| putative uridylate kinase [Arabidopsis thaliana] gb|AEE76131.1| uridylate 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: uridylate kinase 0.0
Putative N-terminus
sp_v2.0_unigene10698 SustainPine v2.0 619
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_818.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TRX8_VITVI 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 2-like 0.0
Putative C-terminus
sp_v2.0_unigene11030 SustainPine v2.0 645
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 5.60265e-11
C-terminus
sp_v2.0_unigene11466 SustainPine v2.0 1374
AutoFact: serine/threonine-protein kinase AFC2 [Arabidopsis thaliana] sp|P51567.1|AFC2_ARATH RecName: Full=Serine/threonine-protein kinase AFC2 gb|AAA57118.1| protein kinase [Arabidopsis thaliana] dbj|BAA08214.1| protein kinase [Arabidopsis thaliana] emb|CAA22989.1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene11482 SustainPine v2.0 607
AutoFact: Intron maturase, type II family protein n=2 Tax=Arabidopsis thaliana RepID=Q9FJR9_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized mitochondrial protein ymf11-like 0.0
Internal
sp_v2.0_unigene12109 SustainPine v2.0 506
AutoFact: XPA-binding protein, putative; K12867 pre-mRNA-splicing factor SYF1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna-splicing factor syf1 0.0
Internal
sp_v2.0_unigene12590 SustainPine v2.0 981
AutoFact: XPA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9S614_RICCO 0.0
FL-Next: tr=XPA-binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: pre-mrna-splicing factor syf1-like 0.0
Internal
sp_v2.0_unigene13108 SustainPine v2.0 774
AutoFact: RNA binding motif protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBJ9_CUCME 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 0.0
C-terminus
sp_v2.0_unigene13948 SustainPine v2.0 596
AutoFact: Maturase (Fragment) n=1 Tax=Pinus sp. Qiu 94013 RepID=Q9T671_9CONI 0.0
FL-Next: tr=MatR; Abies nephrolepis. Mitochondrion. 0.0
Blast2go: maturase 0.0
N-terminus
sp_v2.0_unigene13980 SustainPine v2.0 1446
AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein kinase 0.0
Complete
sp_v2.0_unigene15000 SustainPine v2.0 2126
AutoFact: CLP-like protein 3 [Arabidopsis thaliana] ref|NP_974220.1| CLP-like protein 3 [Arabidopsis thaliana] gb|AAF04897.1|AC011437_12 unknown protein [Arabidopsis thaliana] gb|AAL32944.1| Unknown protein [Arabidopsis thaliana] gb|AAM91151.1| unknown protein [Ara 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein clp1 homolog 0.0
Complete
sp_v2.0_unigene15141 SustainPine v2.0 686
AutoFact: protein kinase MK5 [Mesembryanthemum crystallinum] 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine-protein kinase afc2 2.25056e-25
Complete
sp_v2.0_unigene16000 SustainPine v2.0 1018
AutoFact: splicing factor 3B subunit 5 [Arabidopsis thaliana] sp|P58728.1|SF3BB_ARATH RecName: Full=Uncharacterized protein At4g14342 gb|AAL36377.1| unknown protein [Arabidopsis thaliana] gb|AAM67534.1| unknown protein [Arabidopsis thaliana] dbj|BAC43291.1| unknown 8.99634e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 5 0.0
Complete
sp_v2.0_unigene24041 SustainPine v2.0 1652
AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein kinase 0.0
Complete
sp_v2.0_unigene26354 SustainPine v2.0 1986
AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein kinase 0.0
Complete
sp_v2.0_unigene27628 SustainPine v2.0 973
AutoFact: CLP-like protein 3 [Arabidopsis thaliana] ref|NP_974220.1| CLP-like protein 3 [Arabidopsis thaliana] gb|AAF04897.1|AC011437_12 unknown protein [Arabidopsis thaliana] gb|AAL32944.1| Unknown protein [Arabidopsis thaliana] gb|AAM91151.1| unknown protein [Ara 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein clp1 homolog 0.0
Internal
sp_v2.0_unigene29545 SustainPine v2.0 1965
AutoFact: PK12 protein kinase [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene31317 SustainPine v2.0 2054
AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine-protein kinase afc1 0.0
C-terminus
sp_v2.0_unigene32876 SustainPine v2.0 561
AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine-protein kinase afc1 1.42601e-26
Internal
sp_v2.0_unigene36462 SustainPine v2.0 298
AutoFact: protein kinase [Arabidopsis thaliana] 6.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine-protein kinase afc1 3.7488e-30
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain