Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.

Source: Description from FL-Next

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene13200 SustainPine v2.0 618
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 3.0e-30
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: reverse transcriptase 5.32025e-30
Putative Complete
sp_v2.0_unigene13340 SustainPine v2.0 293
• AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Peperomia caperata RepID=Q56GE9_PEPCA 3.0e-32
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: reverse transcriptase 3.62936e-43
Putative N-terminus
sp_v2.0_unigene20139 SustainPine v2.0 277
• AutoFact: NXRV123_F01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV123_F01 5' similar to Arabidopsis thaliana sequence At2g15410 putative retroelement pol polyprotein see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence. 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: uncharacterized protein loc100249206 9.7425e-24
Putative N-terminus
sp_v2.0_unigene23970 SustainPine v2.0 468
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 1.99965e-42
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: ac069473_8gypsy ty-3 retroelement polyprotein 69905-74404 0.0
C-terminus
sp_v2.0_unigene30118 SustainPine v2.0 573
• AutoFact: Gag-pol polyprotein n=3 Tax=Zea mays RepID=Q8L7J3_MAIZE 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 0.0
C-terminus
sp_v2.0_unigene31204 SustainPine v2.0 680
• AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: rna-directed dna polymerase (reverse transcriptase) 0.0
Complete
sp_v2.0_unigene38649 SustainPine v2.0 549
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: gag pol polyprotein 0.0
Putative N-terminus
sp_v2.0_unigene41515 SustainPine v2.0 388
• AutoFact: Reverse transcriptase (Fragment) n=7 Tax=Prunus mume RepID=C8C9R0_PRUMU 1.99965e-42
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: reverse transcriptase 0.0
Putative Complete
sp_v2.0_unigene48274 SustainPine v2.0 626
• AutoFact: Reverse transcriptase family protein n=1 Tax=Asparagus officinalis RepID=Q2AA00_ASPOF 2.0e-29
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: uncharacterized protein loc100817680 2.49146e-30
Putative Complete
sp_v2.0_unigene48440 SustainPine v2.0 212
• AutoFact: Mutant gag-pol polyprotein n=2 Tax=Pisum sativum RepID=E7BQD6_PEA 2.0e-25
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: gag-pol polyprotein 8.07506e-31
Internal
sp_v2.0_unigene48603 SustainPine v2.0 607
• AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: uncharacterized protein loc100792198 0.0
C-terminus
sp_v2.0_unigene48609 SustainPine v2.0 173
• AutoFact: Reverse transcriptase family protein n=1 Tax=Asparagus officinalis RepID=Q2AA00_ASPOF 2.0e-10
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: reverse transcriptase 7.29705e-14
Putative N-terminus
sp_v2.0_unigene51820 SustainPine v2.0 279
• AutoFact: RVT_1 domain containing protein 2.0e-05
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: protein nynrin- partial 4.58054e-20
Putative N-terminus
sp_v2.0_unigene51875 SustainPine v2.0 507
• AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 1.0e-36
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: reverse transcriptase 5.48468e-42
Putative Complete
sp_v2.0_unigene52400 SustainPine v2.0 256
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6UUH7_ORYSJ 6.0e-23
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: reverse transcriptase 8.9018e-26
Putative N-terminus
sp_v2.0_unigene52472 SustainPine v2.0 356
• AutoFact: RVT_1 domain containing protein 5.0e-16
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: uncharacterized protein partial 6.78913e-33
Putative C-terminus
sp_v2.0_unigene52825 SustainPine v2.0 263
• AutoFact: Gag-pol polyprotein (Fragment) n=1 Tax=Panicum virgatum RepID=A4GMN4_9POAL 4.0e-13
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: gag-pol polyprotein 7.54011e-17
Putative C-terminus
sp_v2.0_unigene58989 SustainPine v2.0 435
• AutoFact: Putative gag-pol polyprotein, identical n=2 Tax=Solanum demissum RepID=Q5NRP4_SOLDE 2.0e-26
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: retroelement pol polyprotein 1.38805e-26
Putative N-terminus
sp_v2.0_unigene61584 SustainPine v2.0 692
• AutoFact: RVT_1 domain containing protein 8.0e-09
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: uncharacterized protein loc100259900 0.0
N-terminus
sp_v2.0_unigene65668 SustainPine v2.0 454
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 7.0e-31
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: uncharacterized protein loc100854783 3.55968e-37
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain