Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.

Source: Description from FL-Next


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene66152 SustainPine v2.0 492
AutoFact: RVT_1 domain containing protein 2.0e-09
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 0.0
Putative Complete
sp_v2.0_unigene69253 SustainPine v2.0 336
AutoFact: reverse transcriptase [Ginkgo biloba] 8.0e-35
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 8.40779e-45
Putative C-terminus
sp_v2.0_unigene69255 SustainPine v2.0 263
AutoFact: RVT_1 domain containing protein 4.0e-05
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 2.98382e-23
Putative C-terminus
sp_v2.0_unigene71429 SustainPine v2.0 271
AutoFact: RVT_1 domain containing protein 3.0e-10
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 8.96781e-34
Putative N-terminus
sp_v2.0_unigene71701 SustainPine v2.0 267
AutoFact: retrotransposon reverse transcriptase, pseudogene, putative n=1 Tax=Candida dubliniensis CD36 RepID=UPI000192DE57 2.0e-15
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: retrotransposon reverse 4.12048e-19
Putative C-terminus
sp_v2.0_unigene73100 SustainPine v2.0 339
AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 2.0e-29
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 2.72557e-38
Putative N-terminus
sp_v2.0_unigene73151 SustainPine v2.0 397
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 1.0e-31
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 2.99034e-37
Putative N-terminus
sp_v2.0_unigene73233 SustainPine v2.0 218
AutoFact: polyprotein [Candida glabrata] 3.0e-18
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: gag-pol polyprotein 1.18877e-21
C-terminus
sp_v2.0_unigene73981 SustainPine v2.0 399
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 1.0e-17
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: uncharacterized protein loc100854181 4.66232e-22
Putative Complete
sp_v2.0_unigene77184 SustainPine v2.0 384
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Poaceae RepID=Q2QUR6_ORYSJ 3.0e-35
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: retrotransposon ty3-gypsy subclass 5.9699e-35
N-terminus
sp_v2.0_unigene77819 SustainPine v2.0 339
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 4.0e-34
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 4.92852e-35
Putative C-terminus
sp_v2.0_unigene81928 SustainPine v2.0 609
AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain