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Assembly Name: uagpf v2.0

Name: SWIB/MDM2 domain

Term: IPR003121  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene869 uagpf v2.0 898
AutoFact: SWI/SNF complex component SNF12 homolog n=2 Tax=Arabidopsis RepID=SNF12_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
N-terminus
uagpf_v2_unigene2703 uagpf v2.0 899
AutoFact: SWIb domain-containing protein [Solanum chacoense] 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swib mdm2 domain-containing protein 0.0
Complete
uagpf_v2_unigene4826 uagpf v2.0 1255
AutoFact: Upstream activation factor subunit UAF30, putative n=1 Tax=Ricinus communis RepID=B9S8L0_RICCO 4.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swib mdm2 domain containing protein 1.26117e-44
C-terminus
uagpf_v2_unigene6579 uagpf v2.0 812
AutoFact: SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] ref|NP_001119064.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] emb|CAB36527.1| putative protein [Arabidopsis thaliana] emb|CAB79536.1| putative protein [Arabidopsis thaliana] gb|AA 8.0e-23
FL-Next: tr=At4g26810; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swib domain-containing protein 1.17292e-27
Complete
uagpf_v2_unigene7519 uagpf v2.0 453
AutoFact: SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Arabidopsis thaliana] sp|Q9FT92.2|Y5843_ARATH RecName: Full=Uncharacterized protein At5g08430 gb|ACF06124.1| At5g08430 [Arabidopsis thaliana] gb|AED91300.1| SWIB/MDM2 and Plus-3 and GYF domain-contai 1.0e-31
FL-Next: sp=Zinc finger CCCH domain-containing protein 44; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 44-like 0.0
Internal
uagpf_v2_unigene12155 uagpf v2.0 736
AutoFact: Upstream activation factor subunit UAF30, putative n=1 Tax=Ricinus communis RepID=B9S8L0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swib mdm2 domain containing protein 0.0
N-terminus
uagpf_v2_unigene13810 uagpf v2.0 915
AutoFact: SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Arabidopsis thaliana] sp|Q9FT92.2|Y5843_ARATH RecName: Full=Uncharacterized protein At5g08430 gb|ACF06124.1| At5g08430 [Arabidopsis thaliana] gb|AED91300.1| SWIB/MDM2 and Plus-3 and GYF domain-contai 1.0e-31
FL-Next: sp=Zinc finger CCCH domain-containing protein 44; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 44-like 0.0
Internal
uagpf_v2_unigene14127 uagpf v2.0 696
AutoFact: SWI/SNF complex component SNF12 homolog n=2 Tax=Arabidopsis RepID=SNF12_ARATH 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Coding
uagpf_v2_unigene14631 uagpf v2.0 896
AutoFact: SWI/SNF complex component SNF12 homolog n=2 Tax=Arabidopsis RepID=SNF12_ARATH 0.0
FL-Next: sp=SWI/SNF complex component SNF12 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
C-terminus
uagpf_v2_unigene15880 uagpf v2.0 605
AutoFact: SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] gb|AAK44049.1|AF370234_1 unknown protein [Arabidopsis thaliana] gb|AAL15230.1| unknown protein [Arabidopsis thaliana] gb|AAM15040.1| Expressed protein [Arabidopsis thaliana] gb|AAM15113.1| Express 5.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swib mdm2 domain-containing protein 2.21842e-29
C-terminus
uagpf_v2_unigene16058 uagpf v2.0 465
AutoFact: SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] ref|NP_001119064.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] emb|CAB36527.1| putative protein [Arabidopsis thaliana] emb|CAB79536.1| putative protein [Arabidopsis thaliana] gb|AA 9.0e-20
FL-Next: tr=At4g26810; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swib domain-containing protein 5.49429e-24
Complete
uagpf_v2_unigene16836 uagpf v2.0 596
AutoFact: SWIb domain-containing protein [Solanum chacoense] 9.0e-26
Blast2go: protein 0.0
unknown
uagpf_v2_unigene16970 uagpf v2.0 738
AutoFact: SWIb domain-containing protein [Solanum chacoense] 9.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene17538 uagpf v2.0 374
AutoFact: Upstream activation factor subunit UAF30, putative n=1 Tax=Ricinus communis RepID=B9S8L0_RICCO 4.0e-37
Blast2go: swib mdm2 domain containing protein 1.26117e-44
unknown
uagpf_v2_unigene17755 uagpf v2.0 780
AutoFact: SWIb domain-containing protein [Solanum chacoense] 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene19553 uagpf v2.0 826
AutoFact: SWI/SNF complex component SNF12 homolog n=2 Tax=Arabidopsis RepID=SNF12_ARATH 0.0
FL-Next: sp=SWI/SNF complex component SNF12 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Putative N-terminus
uagpf_v2_unigene26721 uagpf v2.0 331
AutoFact: SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] gb|AAK44049.1|AF370234_1 unknown protein [Arabidopsis thaliana] gb|AAL15230.1| unknown protein [Arabidopsis thaliana] gb|AAM15040.1| Expressed protein [Arabidopsis thaliana] gb|AAM15113.1| Express 5.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swib mdm2 domain-containing protein 2.21842e-29
N-terminus
uagpf_v2_unigene36093 uagpf v2.0 547
AutoFact: SWIb domain-containing protein [Solanum chacoense] 9.0e-26
Blast2go: protein 0.0
unknown
uagpf_v2_unigene38332 uagpf v2.0 311
AutoFact: DNA binding / nucleic acid binding / protein binding / zinc ion binding 3.0e-10
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 5.76748e-16
Internal
uagpf_v2_unigene39902 uagpf v2.0 258
AutoFact: SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] gb|AAL24145.1| unknown protein [Arabidopsis thaliana] gb|AAM14205.1| unknown protein [Arabidopsis thaliana] gb|AEE84600.1| SWIB complex BAF60b domain-containing protein [Arabidopsis thal 9.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 3.55249e-34
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain