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Assembly Name: uagpf v2.0

Name: RNA-binding, CRM domain

Term: IPR001890  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene2582 uagpf v2.0 456
AutoFact: CRS1_YhbY domain containing protein 1.0e-18
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: crs2-associated factor mitochondrial-like 0.0
C-terminus
uagpf_v2_unigene4005 uagpf v2.0 1056
AutoFact: Protein CREG1, putative n=1 Tax=Ricinus communis RepID=B9RUG5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein creg1 0.0
Complete
uagpf_v2_unigene9478 uagpf v2.0 337
AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 4.0e-07
Blast2go: crs2-associated factor 1 1.45536e-12
Coding
uagpf_v2_unigene15687 uagpf v2.0 617
AutoFact: putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] gb|AEE87011.1| putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] 1.0e-15
Blast2go: rna-binding protein containing kh domain protein 0.0
unknown
uagpf_v2_unigene20079 uagpf v2.0 535
AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 4.0e-07
Blast2go: crs2-associated factor 1 1.45536e-12
Coding
uagpf_v2_unigene26126 uagpf v2.0 647
AutoFact: group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] 1.4013e-45
Blast2go: group ii intron splicing factor crs1-like 0.0
unknown
uagpf_v2_unigene26630 uagpf v2.0 419
AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 0.0
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: chloroplastic group iia intron splicing facilitator crs1 0.0
Internal
uagpf_v2_unigene26785 uagpf v2.0 431
AutoFact: CRS1_YhbY domain containing protein 4.0e-12
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: crs2-associated factor 1 0.0
N-terminus
uagpf_v2_unigene27959 uagpf v2.0 505
AutoFact: CRS1_YhbY domain containing protein 1.0e-18
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: crs2-associated factor mitochondrial-like 0.0
C-terminus
uagpf_v2_unigene29348 uagpf v2.0 261
AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 0.0
Blast2go: chloroplastic group iia intron splicing facilitator crs1 0.0
unknown
uagpf_v2_unigene34999 uagpf v2.0 380
AutoFact: CRM family member 3A [Arabidopsis thaliana] gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana] 1.0e-39
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: chloroplastic group iia intron splicing facilitator crs1 0.0
Internal
uagpf_v2_unigene42665 uagpf v2.0 159
AutoFact: CRS2-associated factor 1, chloroplastic n=3 Tax=Andropogoneae RepID=CAF1P_MAIZE 1.0e-18
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: crs2-associated factor 1 1.38833e-22
Internal
uagpf_v2_unigene43759 uagpf v2.0 215
AutoFact: putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] gb|AEE87011.1| putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein containing kh domain protein 0.0
Putative C-terminus
uagpf_v2_unigene47264 uagpf v2.0 390
AutoFact: Protein CREG1, putative n=1 Tax=Ricinus communis RepID=B9RUG5_RICCO 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein creg1 9.85306e-19
Putative C-terminus
uagpf_v2_unigene47424 uagpf v2.0 227
AutoFact: CRS1_YhbY domain containing protein 3.0e-12
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: crs2-associated factor 1 1.7572e-31
Putative C-terminus
uagpf_v2_unigene48179 uagpf v2.0 360
AutoFact: CRS1_YhbY domain containing protein 1.0e-18
FL-Next: sp=CRS2-associated factor 2, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: crs2-associated factor mitochondrial-like 0.0
Internal
uagpf_v2_unigene49338 uagpf v2.0 229
AutoFact: group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] 1.4013e-45
Blast2go: group ii intron splicing factor crs1-like 0.0
unknown
uagpf_v2_unigene50145 uagpf v2.0 335
AutoFact: Protein CREG1, putative n=1 Tax=Ricinus communis RepID=B9RUG5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein creg1 0.0
C-terminus
uagpf_v2_unigene53028 uagpf v2.0 474
AutoFact: putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] gb|AEE87011.1| putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] 1.0e-15
Blast2go: rna-binding protein containing kh domain protein 0.0
unknown
uagpf_v2_unigene55593 uagpf v2.0 641
AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 4.0e-07
Blast2go: crs2-associated factor 1 1.45536e-12
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain