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Assembly Name: uagpf v2.0

Name: Domain of unknown function DUF834

Term: IPR008552  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene44068 uagpf v2.0 306
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=8 Tax=Oryza sativa RepID=Q2QR60_ORYSJ 3.0e-21
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 8.57647e-25
Internal
uagpf_v2_unigene44507 uagpf v2.0 366
• AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 5.0e-24
• FL-Next: tr=Putative uncharacterized protein orf215; Nicotiana tabacum (Common tobacco). Mitochondrion. 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 1.01887e-28
Internal
uagpf_v2_unigene44605 uagpf v2.0 348
• AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVJ7_9POAL 8.0e-27
• FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 5.06301e-31
Internal
uagpf_v2_unigene44769 uagpf v2.0 262
• AutoFact: Polyprotein n=1 Tax=Zea mays RepID=A5JSC4_MAIZE 8.0e-18
• FL-Next: tr=Putative polyprotein; Oryza sativa (Rice). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 5.79546e-19
Internal
uagpf_v2_unigene46347 uagpf v2.0 387
• AutoFact: Putative polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6F2D6_SOLDE 7.0e-31
• FL-Next: tr=Putative polyprotein, identical; Solanum demissum (Wild potato). 0.0
• Blast2go: retrotransposon protein 1.58637e-35
Internal
uagpf_v2_unigene46553 uagpf v2.0 349
• AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 7.0e-26
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Blast2go: retrotransposon unclassified 6.20541e-30
Putative C-terminus
uagpf_v2_unigene46981 uagpf v2.0 218
• AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI 2.0e-30
• FL-Next: tr=RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Blast2go: pol protein integrase region 2.85279e-40
Internal
uagpf_v2_unigene47994 uagpf v2.0 394
• AutoFact: OSIGBa0093M15.5 protein n=1 Tax=Oryza sativa RepID=Q01MK0_ORYSA 1.0e-25
• FL-Next: tr=OSIGBa0093M15.5 protein; Oryza sativa (Rice). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 2.01081e-29
Internal
uagpf_v2_unigene48843 uagpf v2.0 317
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QS58_ORYSJ 3.0e-11
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 3.6729e-13
Internal
uagpf_v2_unigene51418 uagpf v2.0 358
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Medicago truncatula RepID=Q2HW78_MEDTR 5.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
uagpf_v2_unigene52326 uagpf v2.0 418
• AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: gag-pol polyprotein 0.0
Putative N-terminus
uagpf_v2_unigene55557 uagpf v2.0 437
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
• Blast2go: retrotransposon unclassified 0.0
unknown
uagpf_v2_unigene55893 uagpf v2.0 300
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
• FL-Next: tr=Putative polyprotein; Zea mays (Maize). 0.0
• Blast2go: retrotransposon unclassified 0.0
Internal
uagpf_v2_unigene56006 uagpf v2.0 416
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 1.0e-34
• FL-Next: tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: pol protein integrase region 1.04593e-34
Internal
uagpf_v2_unigene56058 uagpf v2.0 368
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon unclassified 0.0
Internal
uagpf_v2_unigene56069 uagpf v2.0 446
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 0.0
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 0.0
Putative C-terminus
uagpf_v2_unigene56077 uagpf v2.0 693
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon unclassified 0.0
Putative C-terminus
uagpf_v2_unigene56082 uagpf v2.0 382
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 0.0
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain