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Assembly Name: uagpf v2.0

Name: Ribonuclease H domain

Term: IPR002156  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene1187 uagpf v2.0 708
AutoFact: nuclease, putative 7.0e-36
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: rnase h domain-containing protein 7.00649e-45
C-terminus
uagpf_v2_unigene5755 uagpf v2.0 704
AutoFact: Retrotransposon protein, putative, unclassified n=16 Tax=Oryza RepID=Q2R0G5_ORYSJ 4.0e-28
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: uncharacterized protein loc100852570 1.48511e-32
Internal
uagpf_v2_unigene6020 uagpf v2.0 1024
AutoFact: Reverse transcriptase family protein n=1 Tax=Asparagus officinalis RepID=Q2AA48_ASPOF 3.0e-21
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) ribonuclease h 1.79017e-23
Putative Complete
uagpf_v2_unigene7677 uagpf v2.0 612
AutoFact: GEM-like protein 5 [Arabidopsis thaliana] sp|Q9LYV6.1|GEML5_ARATH RecName: Full=GEM-like protein 5 emb|CAB86627.1| ABA-responsive protein-like [Arabidopsis thaliana] gb|AAR20771.1| At5g13200 [Arabidopsis thaliana] gb|AAS92344.1| At5g13200 [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene8136 uagpf v2.0 745
AutoFact: GTP-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RI48_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gtp-binding protein 0.0
C-terminus
uagpf_v2_unigene8739 uagpf v2.0 487
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL 0.0
FL-Next: tr=Putative uncharacterized protein; Beta vulgaris subsp. vulgaris. 0.0
Blast2go: reverse transcriptase 0.0
Internal
uagpf_v2_unigene9137 uagpf v2.0 2231
AutoFact: BTB and TAZ domain protein 4 [Arabidopsis thaliana] gb|AED98350.1| BTB and TAZ domain protein 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: btb poz and taz domain-containing protein 4-like 0.0
Complete
uagpf_v2_unigene9937 uagpf v2.0 277
AutoFact: NXRV123_F01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV123_F01 5' similar to Arabidopsis thaliana sequence At2g15410 putative retroelement pol polyprotein see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence. 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: uncharacterized protein loc100249206 9.7425e-24
Putative N-terminus
uagpf_v2_unigene11645 uagpf v2.0 464
AutoFact: RNase H domain-containing protein n=1 Tax=Brassica oleracea RepID=B2D2H0_BRAOL 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rnase h domain-containing protein 1.14251e-36
C-terminus
uagpf_v2_unigene12344 uagpf v2.0 482
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 4.0e-31
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100807419 4.02256e-37
Internal
uagpf_v2_unigene15109 uagpf v2.0 748
AutoFact: equilibrative nucleoside transporter 6 [Arabidopsis thaliana] gb|AAL25098.1|AF426402_1 putative equilibrative nucleoside transporter ENT6 [Arabidopsis thaliana] gb|AEE82480.1| equilibrative nucleoside transporter 6 [Arabidopsis thaliana] 0.0
FL-Next: tr=Nucleoside transporter, putative; Ricinus communis (Castor bean). 0.0
Blast2go: equilibrative nucleoside transporter 0.0
C-terminus
uagpf_v2_unigene16931 uagpf v2.0 581
AutoFact: GEM-like protein 5 [Arabidopsis thaliana] sp|Q9LYV6.1|GEML5_ARATH RecName: Full=GEM-like protein 5 emb|CAB86627.1| ABA-responsive protein-like [Arabidopsis thaliana] gb|AAR20771.1| At5g13200 [Arabidopsis thaliana] gb|AAS92344.1| At5g13200 [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene17960 uagpf v2.0 810
AutoFact: GEM-like 1 n=2 Tax=Vitis vinifera RepID=A7LH72_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glabra2 expression modulator 0.0
C-terminus
uagpf_v2_unigene25381 uagpf v2.0 669
AutoFact: gag/pol polyprotein [Pisum sativum] 9.99995e-41
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: uncharacterized protein loc100797050 0.0
Putative Complete
uagpf_v2_unigene26641 uagpf v2.0 601
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: catalytic region ribonuclease h 9.62819e-37
Putative Complete
uagpf_v2_unigene27327 uagpf v2.0 373
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 7.0e-30
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: catalytic region ribonuclease h 1.40689e-35
C-terminus
uagpf_v2_unigene27792 uagpf v2.0 321
AutoFact: GEM-like 1 n=2 Tax=Vitis vinifera RepID=A7LH72_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glabra2 expression modulator 0.0
N-terminus
uagpf_v2_unigene31946 uagpf v2.0 813
AutoFact: putative nucleoside transporter, ENT2 [Arabidopsis thaliana] gb|AAF04424.1|AC010927_17 hypothetical protein [Arabidopsis thaliana] gb|AEE74845.1| putative nucleoside transporter, ENT2 [Arabidopsis thaliana] 0.0001
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: equilibrative nucleoside transporter 4 2.28494e-07
Putative C-terminus
uagpf_v2_unigene32222 uagpf v2.0 442
AutoFact: gag/pol polyprotein [Pisum sativum] 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100797050 0.0
Internal
uagpf_v2_unigene32444 uagpf v2.0 353
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QTQ7_ORYSJ 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain