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Assembly Name: uagpf v2.0

Name: CTLH, C-terminal LisH motif

Term: IPR006595  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene239 uagpf v2.0 705
AutoFact: LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana] emb|CAB38936.1| putative protein [Arabidopsis thaliana] emb|CAB80453.1| putative protein [Arabidopsis thaliana] gb|AAV66093.1| At4g37880 [Arabidopsis thaliana] gb|AAX22273.1| At4g37880 [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene685 uagpf v2.0 826
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
uagpf_v2_unigene1480 uagpf v2.0 864
AutoFact: Unassigned protein
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
C-terminus
uagpf_v2_unigene1713 uagpf v2.0 888
AutoFact: WD-40 repeat protein [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd40 repeat-containing protein smu1 0.0
C-terminus
uagpf_v2_unigene1761 uagpf v2.0 885
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] ref|NP_001078546.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB10005.1| WD-repeat protein-like [Arabidopsis thaliana] gb|AAK96726.1| WD-repeat protein-like [Arab 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 26-like 0.0
N-terminus
uagpf_v2_unigene1859 uagpf v2.0 1215
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ramosa 1 enhancer locus 2 0.0
Putative C-terminus
uagpf_v2_unigene2604 uagpf v2.0 601
AutoFact: SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] gb|AAL49784.1| unknown protein [Arabidopsis thaliana] gb|AAM20344.1| unknown protein [Arabidopsis thaliana] gb|AEE31798.1| SPla/RYanodine receptor (SPRY) domain-containing pro 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: spla ryanodine receptor domain-containing protein 0.0
N-terminus
uagpf_v2_unigene3187 uagpf v2.0 864
AutoFact: Unassigned protein
FL-Next: sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene3818 uagpf v2.0 839
AutoFact: LisH and RanBPM domains containing protein [Arabidopsis thaliana] gb|AAF80129.1|AC024174_11 Contains similarity to an unknown protein product from Homo sapiens gi|7020818. ESTs gb|T45317, gb|AV561025, gb|AV524849 come from this gene [Arabidopsis thaliana] 8.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene4591 uagpf v2.0 554
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] ref|NP_001078546.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB10005.1| WD-repeat protein-like [Arabidopsis thaliana] gb|AAK96726.1| WD-repeat protein-like [Arab 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 26-like 0.0
Internal
uagpf_v2_unigene5019 uagpf v2.0 1301
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: topless-related protein 4-like 0.0
N-terminus
uagpf_v2_unigene5367 uagpf v2.0 423
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 8.24703e-21
N-terminus
uagpf_v2_unigene5773 uagpf v2.0 631
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SMF9_RICCO 1.4013e-45
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: topless-related protein 4-like 0.0
Internal
uagpf_v2_unigene6055 uagpf v2.0 978
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-07
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: wd repeat-containing 0.0
C-terminus
uagpf_v2_unigene6272 uagpf v2.0 787
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Blast2go: wd repeat-containing 0.0
C-terminus
uagpf_v2_unigene8390 uagpf v2.0 861
AutoFact: WD-40 repeat protein [Solanum lycopersicum] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: wd40 repeat-containing protein smu1 0.0
N-terminus
uagpf_v2_unigene9191 uagpf v2.0 374
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
uagpf_v2_unigene9907 uagpf v2.0 340
AutoFact: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like n=1 Tax=Medicago truncatula RepID=Q2HW32_MEDTR 0.0
FL-Next: sp=Topless-related protein 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: topless-related protein 3 0.0
Internal
uagpf_v2_unigene9995 uagpf v2.0 179
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
Blast2go: topless-related protein 4-like 0.0
unknown
uagpf_v2_unigene10234 uagpf v2.0 415
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain