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Assembly Name: uagpf v2.0

Name: LisH dimerisation motif

Term: IPR006594  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene36655 uagpf v2.0 424
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] ref|NP_001078546.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB10005.1| WD-repeat protein-like [Arabidopsis thaliana] gb|AAK96726.1| WD-repeat protein-like [Arab 0.0
Blast2go: wd repeat-containing protein 26-like 0.0
unknown
uagpf_v2_unigene36739 uagpf v2.0 393
AutoFact: LisH and RanBPM domains containing protein [Arabidopsis thaliana] gb|AAF80129.1|AC024174_11 Contains similarity to an unknown protein product from Homo sapiens gi|7020818. ESTs gb|T45317, gb|AV561025, gb|AV524849 come from this gene [Arabidopsis thaliana] 8.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene37428 uagpf v2.0 461
AutoFact: Unassigned protein
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Blast2go: ramosa 1 enhancer locus 2 0.0
Internal
uagpf_v2_unigene37460 uagpf v2.0 455
AutoFact: transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana] gb|AAR28022.1| TAF5 [Arabidopsis thaliana] gb|AED93406.1| transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: transcription initiation factor tfiid subunit 5-like 0.0
C-terminus
uagpf_v2_unigene37915 uagpf v2.0 306
AutoFact: HEAT repeat-containing protein-like n=3 Tax=Oryza sativa RepID=Q5QMW8_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: lish domain and heat repeat-containing protein kiaa1468 homolog 0.0
C-terminus
uagpf_v2_unigene38722 uagpf v2.0 485
AutoFact: putative WD-repeat protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene38989 uagpf v2.0 475
AutoFact: Unassigned protein
unknown
uagpf_v2_unigene39339 uagpf v2.0 498
AutoFact: protein TOPLESS [Arabidopsis thaliana] ref|NP_849672.1| protein TOPLESS [Arabidopsis thaliana] ref|NP_001031050.1| protein TOPLESS [Arabidopsis thaliana] ref|NP_001031051.1| protein TOPLESS [Arabidopsis thaliana] sp|Q94AI7.1|TPL_ARATH RecName: Full=Protei 8.0e-16
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein topless 3.20395e-16
Internal
uagpf_v2_unigene39663 uagpf v2.0 240
AutoFact: WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ 2.0e-26
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Blast2go: ramosa 1 enhancer locus 2 1.38002e-28
Internal
uagpf_v2_unigene40372 uagpf v2.0 332
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RWJ4_RICCO 0.0
Blast2go: transcriptional corepressor leunig 0.0
unknown
uagpf_v2_unigene40758 uagpf v2.0 346
AutoFact: WD-repeat protein, putative (EC:2.7.11.7) 6.0e-21
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transcriptional corepressor leunig 4.03913e-21
N-terminus
uagpf_v2_unigene41147 uagpf v2.0 417
AutoFact: MIP-T3 multi-domain protein 8.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: f-box-like wd repeat-containing protein tbl1xr1-like 0.0
N-terminus
uagpf_v2_unigene41181 uagpf v2.0 357
AutoFact: DEAD-box ATP-dependent RNA helicase 56 n=2 Tax=Arabidopsis thaliana RepID=F4JWF6_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 56 0.0
C-terminus
uagpf_v2_unigene42343 uagpf v2.0 315
AutoFact: [R] COG2319 FOG: WD40 repeat 3.0e-07
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Blast2go: wd repeat-containing 0.0
Internal
uagpf_v2_unigene42506 uagpf v2.0 267
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 7.0e-05
Blast2go: transcriptional corepressor leunig 3.10352e-31
Putative coding
uagpf_v2_unigene42772 uagpf v2.0 302
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: wd repeat-containing 0.0
Internal
uagpf_v2_unigene45001 uagpf v2.0 379
AutoFact: Unassigned protein
FL-Next: sp=DDB1- and CUL4-associated factor homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ddb1- and cul4-associated factor homolog 1-like 5.50638e-28
Internal
uagpf_v2_unigene45775 uagpf v2.0 393
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: topless-related protein 4 9.8361e-21
Internal
uagpf_v2_unigene46402 uagpf v2.0 357
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ramosa 1 enhancer locus 2 0.0
Internal
uagpf_v2_unigene46870 uagpf v2.0 227
AutoFact: Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lysine-specific histone demethylase-like protein 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain