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Assembly Name: uagpf v2.0

Name: RNA-processing protein, HAT helix

Term: IPR003107  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene152 uagpf v2.0 649
AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 3.0e-29
Blast2go: tpr domain protein 0.0
unknown
uagpf_v2_unigene313 uagpf v2.0 1992
AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene315 uagpf v2.0 654
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tetratricopeptide repeat domain-containing protein 2.8026e-45
C-terminus
uagpf_v2_unigene678 uagpf v2.0 365
AutoFact: cleavage stimulation factor 77 [Arabidopsis thaliana] 0.0
Blast2go: plant rna cleavage stimulation 0.0
unknown
uagpf_v2_unigene1606 uagpf v2.0 797
AutoFact: Hepatocellular carcinoma-associated antigen, putative n=1 Tax=Ricinus communis RepID=B9RXI9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u3 small nucleolar rna-associated protein 6 homolog 0.0
C-terminus
uagpf_v2_unigene2210 uagpf v2.0 369
AutoFact: PREDICTED: similar to binding n=1 Tax=Vitis vinifera RepID=UPI00019836A8 0.0
Blast2go: tetratricopeptide repeat-containing protein 0.0
unknown
uagpf_v2_unigene4617 uagpf v2.0 531
AutoFact: Unassigned protein
Blast2go: uncharacterized protein loc100809777 3.36312e-44
unknown
uagpf_v2_unigene5060 uagpf v2.0 1177
AutoFact: Pre-mRNA-processing protein prp39, putative n=1 Tax=Ricinus communis RepID=B9SKM7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene6533 uagpf v2.0 649
AutoFact: FAP multi-domain protein 3.0e-09
Blast2go: uncharacterized protein loc100784254 1.70422e-38
unknown
uagpf_v2_unigene7954 uagpf v2.0 577
AutoFact: XPA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9S614_RICCO 0.0
FL-Next: tr=XPA-binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: pre-mrna-splicing factor syf1-like 0.0
Internal
uagpf_v2_unigene8223 uagpf v2.0 267
AutoFact: cell cycle control crn (crooked neck) protein-like [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein Sb01g012080; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: pre-mrna-splicing factor clf1 0.0
Internal
uagpf_v2_unigene10734 uagpf v2.0 438
AutoFact: Squamous cell carcinoma antigen recognized by T-cells, putative n=1 Tax=Ricinus communis RepID=B9SPA3_RICCO 4.0e-37
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: squamous cell carcinoma antigen recognized by t-cells 3-like 4.8611e-41
C-terminus
uagpf_v2_unigene11503 uagpf v2.0 903
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein rrp5 homolog 0.0
C-terminus
uagpf_v2_unigene13596 uagpf v2.0 447
AutoFact: FAP multi-domain protein 1.0e-07
Blast2go: protein 5.35504e-29
unknown
uagpf_v2_unigene13651 uagpf v2.0 470
AutoFact: PREDICTED: similar to binding n=1 Tax=Vitis vinifera RepID=UPI00019836A8 0.0
Blast2go: tetratricopeptide repeat-containing protein 0.0
unknown
uagpf_v2_unigene16052 uagpf v2.0 562
AutoFact: putative pre-mRNA splicing factor [Oryza sativa Japonica Group] gb|AAP54456.1| U5 snRNP-associated 102 kDa protein, putative, expressed [Oryza sativa Japonica Group] gb|EAY79087.1| hypothetical protein OsI_34194 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna splicing factor 0.0
C-terminus
uagpf_v2_unigene17318 uagpf v2.0 495
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100809777 3.36312e-44
Putative C-terminus
uagpf_v2_unigene17702 uagpf v2.0 577
AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 7.0e-36
Blast2go: tetratricopeptide repeat domain-containing protein 0.0
unknown
uagpf_v2_unigene17712 uagpf v2.0 733
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tetratricopeptide repeat domain-containing protein 2.8026e-45
C-terminus
uagpf_v2_unigene18144 uagpf v2.0 1073
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 1.47226e-35
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain