Sustainpine_db
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Assembly Name: uagpf v2.0

Name: Helicase/RNase D C-terminal, HRDC domain

Term: IPR002121  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene107 uagpf v2.0 616
AutoFact: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] ref|NP_001117233.1| Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gb|AAF79721.1|AC005106_2 T25N20.3 [Arabidopsis 0.0
Putative coding
uagpf_v2_unigene2790 uagpf v2.0 693
AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9SXG0_RICCO 2.0e-22
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna helicase 1.88456e-25
Putative C-terminus
uagpf_v2_unigene3550 uagpf v2.0 628
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: hypothetical protein MTR_4g116470 [Medicago truncatula] 1.96182e-44
N-terminus
uagpf_v2_unigene3929 uagpf v2.0 716
AutoFact: pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 0.0
FL-Next: tr=3'-5' exonuclease, putative; Ricinus communis (Castor bean). 0.0
Blast2go: rrp6-like protein 1 0.0
C-terminus
uagpf_v2_unigene4381 uagpf v2.0 604
AutoFact: DUF668 multi-domain protein 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: uncharacterized protein 0.0
Internal
uagpf_v2_unigene6798 uagpf v2.0 609
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_118.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T513_VITVI 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100263642 0.0
Putative C-terminus
uagpf_v2_unigene12452 uagpf v2.0 634
AutoFact: DUF668 multi-domain protein 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
C-terminus
uagpf_v2_unigene15376 uagpf v2.0 740
AutoFact: DUF668 multi-domain protein 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
C-terminus
uagpf_v2_unigene16334 uagpf v2.0 1363
AutoFact: DUF668 multi-domain protein 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein 0.0
N-terminus
uagpf_v2_unigene25750 uagpf v2.0 445
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: rrp6-like protein 3 0.0
Internal
uagpf_v2_unigene31158 uagpf v2.0 206
AutoFact: DNA helicase recq1, putative n=1 Tax=Ricinus communis RepID=B9S1J8_RICCO 0.0
Blast2go: atp-dependent dna helicase q-like 2 0.0
Coding
uagpf_v2_unigene35864 uagpf v2.0 105
AutoFact: DNA helicase recq1, putative n=1 Tax=Ricinus communis RepID=B9S1J8_RICCO 0.0
Blast2go: atp-dependent dna helicase q-like 2 0.0
unknown
uagpf_v2_unigene36760 uagpf v2.0 475
AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 3.99931e-42
FL-Next: sp=ATP-dependent DNA helicase Q-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp-dependent dna helicase q-like 2-like 0.0
Putative N-terminus
uagpf_v2_unigene38908 uagpf v2.0 295
AutoFact: 3'-5' exonuclease, putative n=1 Tax=Ricinus communis RepID=B9SDW9_RICCO 5.0e-40
FL-Next: tr=Putative uncharacterized protein At2g32420; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rrp6-like protein 3 0.0
Internal
uagpf_v2_unigene38927 uagpf v2.0 532
AutoFact: Exosome complex exonuclease RRP6 n=3 Tax=Arabidopsis RepID=A9LLI7_ARATH 3.0e-26
FL-Next: tr=Exosome complex exonuclease RRP6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: exosome component 10-like 4.42875e-29
N-terminus
uagpf_v2_unigene44315 uagpf v2.0 329
AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9RFH2_RICCO 0.0
FL-Next: sp=ATP-dependent DNA helicase Q-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna helicase 0.0
Internal
uagpf_v2_unigene50398 uagpf v2.0 411
AutoFact: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] ref|NP_001117233.1| Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gb|AAF79721.1|AC005106_2 T25N20.3 [Arabidopsis 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain