Sustainpine_db
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Assembly Name: uagpf v2.0

Name: Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type

Term: IPR006649  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene52081 uagpf v2.0 673
AutoFact: Small nuclear ribonucleoprotein-associated protein, putative n=2 Tax=Ricinus communis RepID=B9SV77_RICCO 3.0e-35
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: small nuclear ribonucleoprotein associated protein b 9.38348e-36
N-terminus
uagpf_v2_unigene52370 uagpf v2.0 288
AutoFact: thiamin pyrophosphokinase1 [Arabidopsis thaliana] gb|AAL25560.1| At1g02880/F22D16_33 [Arabidopsis thaliana] gb|AAM26660.1| At1g02880/F22D16_33 [Arabidopsis thaliana] gb|AEE27488.1| thiamin pyrophosphokinase1 [Arabidopsis thaliana] 4.99997e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: thiamin pyrophosphokinase1 0.0
C-terminus
uagpf_v2_unigene52916 uagpf v2.0 401
AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein g 0.0
Putative Complete
uagpf_v2_unigene53425 uagpf v2.0 393
AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein g 2.92531e-39
Complete
uagpf_v2_unigene53535 uagpf v2.0 400
AutoFact: Sm-like protein [Arabidopsis thaliana] 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: predicted protein [Nematostella vectensis] 7.11258e-11
C-terminus
uagpf_v2_unigene53579 uagpf v2.0 233
AutoFact: small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] 0.0
Blast2go: small nuclear ribonucleoprotein sm d3 0.0
unknown
uagpf_v2_unigene53593 uagpf v2.0 279
AutoFact: putative Sm protein F [Oryza sativa Japonica Group] dbj|BAG86709.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57059.1| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group] 8.0e-23
Blast2go: protein 6.70806e-26
unknown
uagpf_v2_unigene53818 uagpf v2.0 376
AutoFact: small nuclear ribonucleoprotein F [Arabidopsis thaliana] ref|XP_002867361.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp. lyrata] ref|XP_002885912.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp. lyrata] sp|Q9SUM2. 5.0e-37
Blast2go: small nuclear ribonucleoprotein f 0.0
unknown
uagpf_v2_unigene54127 uagpf v2.0 322
AutoFact: Small nuclear ribonucleoprotein polypeptide G (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q677D4_HYAOR 2.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
uagpf_v2_unigene54169 uagpf v2.0 344
AutoFact: Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RSP3_PHYPA 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein e 5.08037e-28
Putative Complete
uagpf_v2_unigene55195 uagpf v2.0 465
AutoFact: small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] emb|CAB83134.1| small nuclear ribonucleoprot 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleo protein 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain