Sustainpine_db
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Assembly Name: uagpf v2.0

Name: Helix-hairpin-helix DNA-binding motif, class 1

Term: IPR003583  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene40483 uagpf v2.0 403
AutoFact: kinesin family member 22 [Arabidopsis thaliana] gb|AAX12877.1| At5g02370 [Arabidopsis thaliana] gb|AED90464.1| kinesin family member 22 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kinesin-like protein kif22-like 0.0
Putative N-terminus
uagpf_v2_unigene46883 uagpf v2.0 354
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 2.0e-16
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein argonaute 16-like 7.52342e-19
Internal
uagpf_v2_unigene47066 uagpf v2.0 370
AutoFact: barley mlo defense gene homolog2 [Zea mays] gb|AAK38338.1| seven transmembrane protein Mlo2 [Zea mays] gb|ACN28009.1| unknown [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
uagpf_v2_unigene47181 uagpf v2.0 401
AutoFact: A/G-specific adenine glycosylase [Arabidopsis thaliana] gb|AEE83174.1| A/G-specific adenine glycosylase [Arabidopsis thaliana] 0.0
FL-Next: tr=A/G-specific adenine DNA glycosylase, putative, expressed; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: a g-specific adenine dna glycosylase 0.0
Internal
uagpf_v2_unigene47540 uagpf v2.0 338
AutoFact: Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Nicotiana tabacum RepID=POLX_TOBAC 7.0e-26
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: polx_tobac ame: full=retrovirus-related pol polyprotein from transposon tnt 1-94 includes: ame: full=protease includes: ame: full=reverse transcriptase includes: ame: full=endonuclease 1.49448e-25
Internal
uagpf_v2_unigene50848 uagpf v2.0 479
AutoFact: ARGONAUTE 1 n=2 Tax=Nicotiana RepID=D6RUV9_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: argonaute protein group 0.0
C-terminus
uagpf_v2_unigene51261 uagpf v2.0 288
AutoFact: RVT_2 domain containing protein 4.0e-26
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: hypothetical protein VITISV_028342 [Vitis vinifera] 1.91795e-25
Internal
uagpf_v2_unigene51533 uagpf v2.0 459
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 9.94922e-44
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
C-terminus
uagpf_v2_unigene52109 uagpf v2.0 441
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: hypothetical protein VITISV_036909 [Vitis vinifera] 2.28255e-34
Internal
uagpf_v2_unigene52983 uagpf v2.0 596
AutoFact: Excision repair cross-complementing 1 ercc1, putative n=1 Tax=Ricinus communis RepID=B9RF25_RICCO 0.0
Blast2go: dna excision repair protein ercc-1 0.0
unknown
uagpf_v2_unigene55743 uagpf v2.0 558
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
uagpf_v2_unigene55952 uagpf v2.0 526
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
C-terminus
uagpf_v2_unigene55973 uagpf v2.0 395
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain