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Assembly Name: uagpf v2.0

Name: Helix-hairpin-helix DNA-binding motif, class 1

Term: IPR003583  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene13937 uagpf v2.0 747
AutoFact: DNA binding protein [Arabidopsis thaliana] gb|AAG51077.1|AC069472_17 unknown protein; 19524-20560 [Arabidopsis thaliana] gb|AAM64678.1| unknown [Arabidopsis thaliana] gb|AEE75167.1| DNA binding protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding protein 0.0
Complete
uagpf_v2_unigene14542 uagpf v2.0 542
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
Blast2go: argonaute protein group 0.0
unknown
uagpf_v2_unigene14683 uagpf v2.0 552
AutoFact: mitochondrial pyruvate dehydrogenase kinase [Brassica napus] gb|ABA25868.1| mitochondrial pyruvate dehydrogenase kinase [Brassica napus] 0.0
Blast2go: pyruvate dehydrogenase kinase 0.0
unknown
uagpf_v2_unigene18467 uagpf v2.0 758
AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9SP45_RICCO 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: argonaute-like protein 0.0
C-terminus
uagpf_v2_unigene19240 uagpf v2.0 1929
AutoFact: Flap endonuclease 1 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=FEN1_OSTLU 0.0
FL-Next: sp=Flap endonuclease 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: flap endonuclease-1 0.0
Complete
uagpf_v2_unigene19475 uagpf v2.0 461
AutoFact: Flap endonuclease 1 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=FEN1_OSTLU 0.0
FL-Next: sp=Flap endonuclease 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: flap endonuclease-1 0.0
N-terminus
uagpf_v2_unigene20395 uagpf v2.0 984
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
C-terminus
uagpf_v2_unigene20409 uagpf v2.0 1150
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 1.4013e-45
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
uagpf_v2_unigene25843 uagpf v2.0 834
AutoFact: putative GTP-binding protein [Arabidopsis thaliana] emb|CAB87708.1| putative GTP-binding protein [Arabidopsis thaliana] gb|AAL25554.1| AT5g11480/F15N18_70 [Arabidopsis thaliana] gb|AAN28859.1| At5g11480/F15N18_70 [Arabidopsis thaliana] gb|AED91684.1| puta 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gtp-binding protein 0.0
N-terminus
uagpf_v2_unigene26599 uagpf v2.0 301
AutoFact: kinesin family member 22 [Arabidopsis thaliana] gb|AAX12877.1| At5g02370 [Arabidopsis thaliana] gb|AED90464.1| kinesin family member 22 [Arabidopsis thaliana] 0.0
Blast2go: kinesin-like protein kif22-like 0.0
unknown
uagpf_v2_unigene28300 uagpf v2.0 419
AutoFact: kinesin family member 22 [Arabidopsis thaliana] gb|AAX12877.1| At5g02370 [Arabidopsis thaliana] gb|AED90464.1| kinesin family member 22 [Arabidopsis thaliana] 0.0
Blast2go: kinesin-like protein kif22-like 0.0
Coding
uagpf_v2_unigene28430 uagpf v2.0 443
AutoFact: mitochondrial pyruvate dehydrogenase kinase [Brassica napus] gb|ABA25868.1| mitochondrial pyruvate dehydrogenase kinase [Brassica napus] 0.0
FL-Next: tr=cDNA clone:J023007C01, full insert sequence; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: pyruvate dehydrogenase kinase 0.0
C-terminus
uagpf_v2_unigene29391 uagpf v2.0 423
AutoFact: putative GTP-binding protein [Arabidopsis thaliana] emb|CAB87708.1| putative GTP-binding protein [Arabidopsis thaliana] gb|AAL25554.1| AT5g11480/F15N18_70 [Arabidopsis thaliana] gb|AAN28859.1| At5g11480/F15N18_70 [Arabidopsis thaliana] gb|AED91684.1| puta 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gtp-binding protein 0.0
C-terminus
uagpf_v2_unigene30863 uagpf v2.0 369
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: argonaute protein group 0.0
Internal
uagpf_v2_unigene31316 uagpf v2.0 291
AutoFact: replication factor C1 [Arabidopsis thaliana] emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: replication factor c subunit 1-like 0.0
Internal
uagpf_v2_unigene32335 uagpf v2.0 459
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: hypothetical protein VITISV_042009 [Vitis vinifera] 0.0
Putative C-terminus
uagpf_v2_unigene34473 uagpf v2.0 274
AutoFact: DNA binding protein [Arabidopsis thaliana] gb|AAG51077.1|AC069472_17 unknown protein; 19524-20560 [Arabidopsis thaliana] gb|AAM64678.1| unknown [Arabidopsis thaliana] gb|AEE75167.1| DNA binding protein [Arabidopsis thaliana] 0.0
Blast2go: dna binding protein 0.0
unknown
uagpf_v2_unigene35648 uagpf v2.0 133
AutoFact: 8-oxoguanine DNA glycosylase, putative n=1 Tax=Ricinus communis RepID=B9S2W7_RICCO 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: n-glycosylase dna lyase 7.42815e-29
Internal
uagpf_v2_unigene36252 uagpf v2.0 583
AutoFact: mitochondrial pyruvate dehydrogenase kinase [Brassica napus] gb|ABA25868.1| mitochondrial pyruvate dehydrogenase kinase [Brassica napus] 0.0
Blast2go: pyruvate dehydrogenase kinase 0.0
unknown
uagpf_v2_unigene36601 uagpf v2.0 651
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 3.0e-30
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein argonaute 16-like 1.47661e-33
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain