Sustainpine_db
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Assembly Name: uagpf v2.0

Name: Zinc finger, LSD1-type

Term: IPR005735  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene8504 uagpf v2.0 1404
AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: metacaspase 1 0.0
Putative Complete
uagpf_v2_unigene9012 uagpf v2.0 496
AutoFact: zinc finger protein LSD1 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lsd1-like protein 0.0
N-terminus
uagpf_v2_unigene10950 uagpf v2.0 350
AutoFact: WS02926.CR_L20 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02926_L20 3', mRNA sequence. 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: strawberry notch-like protein 0.0
C-terminus
uagpf_v2_unigene12098 uagpf v2.0 737
AutoFact: Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase non-catalytic subunit jp650 0.0
N-terminus
uagpf_v2_unigene17344 uagpf v2.0 824
AutoFact: zinc finger protein LSD1 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lsd1-like protein 0.0
C-terminus
uagpf_v2_unigene25540 uagpf v2.0 381
AutoFact: Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase non-catalytic subunit jp650 0.0
C-terminus
uagpf_v2_unigene28247 uagpf v2.0 555
AutoFact: Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase non-catalytic subunit jp650 0.0
Internal
uagpf_v2_unigene36144 uagpf v2.0 548
AutoFact: zinc finger protein LSD1 [Oryza sativa Japonica Group] 0.0
Blast2go: lsd1-like protein 0.0
unknown
uagpf_v2_unigene52063 uagpf v2.0 440
AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: metacaspase 9 2.51004e-23
C-terminus
uagpf_v2_unigene52936 uagpf v2.0 372
AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: metacaspase 1 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain