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Assembly Name: uagpf v2.0

Name: Nucleic acid binding, OB-fold, tRNA/helicase-type

Term: IPR004365  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene283 uagpf v2.0 488
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
Putative coding
uagpf_v2_unigene1670 uagpf v2.0 840
AutoFact: DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Os05g0160800 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna polymerase epsilon subunit 2-like 0.0
C-terminus
uagpf_v2_unigene2923 uagpf v2.0 676
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: replication factor a1 0.0
Putative C-terminus
uagpf_v2_unigene3228 uagpf v2.0 401
AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
Blast2go: asparaginyl-trna cytoplasmic 1-like 0.0
Putative coding
uagpf_v2_unigene3524 uagpf v2.0 1266
AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: asparaginyl-trna cytoplasmic 1-like 0.0
C-terminus
uagpf_v2_unigene3561 uagpf v2.0 604
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: recq-mediated genome instability protein 2-like 0.0
Complete
uagpf_v2_unigene3926 uagpf v2.0 1358
AutoFact: Replication factor A 1, rfa1, putative n=1 Tax=Ricinus communis RepID=B9RK18_RICCO 0.0
FL-Next: tr=RPA 70kDa subunit; Pisum sativum (Garden pea). 0.0
Blast2go: replication factor a1 0.0
Putative C-terminus
uagpf_v2_unigene4694 uagpf v2.0 662
AutoFact: asparaginyl-tRNA synthetase [Arabidopsis thaliana] sp|O48593.3|SYNO_ARATH RecName: Full=Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial; AltName: Full=Asparagine--tRNA ligase; Short=AsnRS; Flags: Precursor gb|AAL84964.1| AT4g17300/dl4685w [Arabid 0.0
FL-Next: sp=Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene4828 uagpf v2.0 461
AutoFact: putative aspartate--tRNA ligase [Arabidopsis thaliana] emb|CAB80093.1| putative aspartate--tRNA ligase [Arabidopsis thaliana] 0.0
Blast2go: aspartyl-trna synthetase 0.0
unknown
uagpf_v2_unigene5469 uagpf v2.0 1449
AutoFact: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] emb|CAB87691.1| putative protein [Arabidopsis thaliana] gb|AAM13183.1| putative protein [Arabidopsis thaliana] gb|AAP68292.1| At5g11730 [Arabidopsis thaliana 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
uagpf_v2_unigene6257 uagpf v2.0 1410
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene6393 uagpf v2.0 1000
AutoFact: aspartyl-tRNA synthetase [Arabidopsis thaliana] ref|NP_194847.3| aspartyl-tRNA synthetase [Arabidopsis thaliana] emb|CAB79836.1| aspartate--tRNA ligase-like protein [Arabidopsis thaliana] dbj|BAH20270.1| AT4G31180 [Arabidopsis thaliana] gb|AEE85872.1| asp 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: aspartyl-trna synthetase 0.0
N-terminus
uagpf_v2_unigene8446 uagpf v2.0 633
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: replication factor a1 0.0
C-terminus
uagpf_v2_unigene11277 uagpf v2.0 767
AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
FL-Next: sp=Asparaginyl-tRNA synthetase, cytoplasmic 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: asparaginyl-trna cytoplasmic 1-like 0.0
Putative N-terminus
uagpf_v2_unigene11666 uagpf v2.0 727
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
N-terminus
uagpf_v2_unigene11671 uagpf v2.0 348
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: replication factor a1 0.0
Putative Complete
uagpf_v2_unigene12873 uagpf v2.0 1908
AutoFact: aspartyl-tRNA synthetase [Arabidopsis thaliana] ref|NP_194847.3| aspartyl-tRNA synthetase [Arabidopsis thaliana] emb|CAB79836.1| aspartate--tRNA ligase-like protein [Arabidopsis thaliana] dbj|BAH20270.1| AT4G31180 [Arabidopsis thaliana] gb|AEE85872.1| asp 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: aspartyl-trna synthetase 0.0
C-terminus
uagpf_v2_unigene16178 uagpf v2.0 2265
AutoFact: Lysyl-tRNA synthetase (Fragment) n=6 Tax=Magnoliophyta RepID=D7U9T8_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lysyl-trna synthetase 0.0
C-terminus
uagpf_v2_unigene16523 uagpf v2.0 1165
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 2.94273e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene16556 uagpf v2.0 1162
AutoFact: replication protein A 30kDa [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: replication protein a 32 kda subunit 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain