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Assembly Name: uagpf v2.0

Name: RNA polymerase Rpb2, OB-fold

Term: IPR014724  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene1906 uagpf v2.0 388
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase iii subunit rpc2 0.0
N-terminus
uagpf_v2_unigene4125 uagpf v2.0 759
• AutoFact: DNA-directed RNA polymerase n=26 Tax=Embryophyta RepID=A9SJE5_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase ii second largest subunit 0.0
C-terminus
uagpf_v2_unigene4398 uagpf v2.0 414
• AutoFact: DNA-directed RNA polymerase n=26 Tax=Embryophyta RepID=A9SJE5_PHYPA 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Blast2go: rna polymerase ii second largest subunit 0.0
Internal
uagpf_v2_unigene6437 uagpf v2.0 560
• AutoFact: BHLH transcription factor PTF1-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6EPZ6_ORYSJ 9.94922e-44
• Blast2go: transcription factor bhlh66-like 0.0
unknown
uagpf_v2_unigene7701 uagpf v2.0 663
• AutoFact: Ribosomal protein L2 n=1 Tax=Cycas taitungensis RepID=B0BLF2_CYCTA 1.0e-18
• FL-Next: tr=Ribosomal protein L2; Cycas taitungensis (Prince sago) (Cycas taiwaniana). Mitochondrion. 0.0
• Blast2go: ribosomal protein l2 1.73866e-20
Internal
uagpf_v2_unigene10389 uagpf v2.0 1152
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase iv second largest subunit 0.0
Complete
uagpf_v2_unigene11260 uagpf v2.0 743
• AutoFact: BHLH transcription factor PTF1-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6EPZ6_ORYSJ 9.94922e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor bhlh66-like 0.0
Putative C-terminus
uagpf_v2_unigene14677 uagpf v2.0 825
• AutoFact: basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group] dbj|BAD19276.1| basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group] 2.00386e-43
• Blast2go: protein 0.0
Coding
uagpf_v2_unigene16347 uagpf v2.0 340
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase iv second largest subunit 0.0
C-terminus
uagpf_v2_unigene16532 uagpf v2.0 703
• AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 9.94922e-44
• Blast2go: transcription factor bhlh63-like 0.0
unknown
uagpf_v2_unigene19120 uagpf v2.0 822
• AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 9.94922e-44
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: transcription factor bhlh63-like 0.0
C-terminus
uagpf_v2_unigene25132 uagpf v2.0 474
• AutoFact: BHLH transcription factor PTF1-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6EPZ6_ORYSJ 9.94922e-44
• Blast2go: transcription factor bhlh66-like 0.0
Putative coding
uagpf_v2_unigene27626 uagpf v2.0 318
• AutoFact: DNA-directed RNA polymerase n=26 Tax=Embryophyta RepID=A9SJE5_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase ii second largest subunit 0.0
N-terminus
uagpf_v2_unigene27894 uagpf v2.0 341
• AutoFact: Ribosomal protein L2 n=1 Tax=Cycas taitungensis RepID=B0BLF2_CYCTA 0.0
• FL-Next: sp=50S ribosomal protein L2, chloroplastic 2; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). Plastid; Chloroplast. 0.0
• Blast2go: ribosomal protein l2 0.0
Internal
uagpf_v2_unigene30513 uagpf v2.0 382
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna polymerase iv 0.0
Internal
uagpf_v2_unigene34494 uagpf v2.0 449
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Blast2go: protein 0.0
Internal
uagpf_v2_unigene38459 uagpf v2.0 319
• AutoFact: DNA-directed RNA polymerase n=26 Tax=Embryophyta RepID=A9SJE5_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase ii second largest subunit 0.0
Putative C-terminus
uagpf_v2_unigene39111 uagpf v2.0 230
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: protein 0.0
Internal
uagpf_v2_unigene40424 uagpf v2.0 370
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta 2; Pinus lambertiana (Sugar pine). Plastid; Chloroplast. 0.0
• Blast2go: dna-directed rna polymerase iii subunit rpc2 0.0
Internal
uagpf_v2_unigene42789 uagpf v2.0 324
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain