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Assembly Name: uagpf v2.0

Name: RNA polymerase sigma factor 54, interaction

Term: IPR002078  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene14101 uagpf v2.0 917
• AutoFact: Rab2/RabB-family small GTPase n=4 Tax=Physcomitrella patens subsp. patens RepID=A9SC62_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab2 -family small gtpase 0.0
Complete
uagpf_v2_unigene14264 uagpf v2.0 621
• AutoFact: Rab1/RabD-family small GTPase n=7 Tax=Embryophyta RepID=A9SLS3_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab family gtpase 0.0
C-terminus
uagpf_v2_unigene15440 uagpf v2.0 1416
• AutoFact: Ras-related protein RABA2a [Arabidopsis thaliana] sp|O04486.1|RAA2A_ARATH RecName: Full=Ras-related protein RABA2a; Short=AtRABA2a; AltName: Full=Ras-related protein Rab11C; Short=AtRab11C; Flags: Precursor gb|AAB60720.1| Strong similarity to A. thaliana 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab11 -family small gtpase 0.0
Complete
uagpf_v2_unigene15841 uagpf v2.0 588
• AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab family gtpase 0.0
Putative Complete
uagpf_v2_unigene16507 uagpf v2.0 606
• AutoFact: Ras-related protein Rab-18 n=4 Tax=Poaceae RepID=B6TCF9_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ras-related protein rab-18 0.0
C-terminus
uagpf_v2_unigene16823 uagpf v2.0 1114
• AutoFact: small GTP-binding protein [Mesembryanthemum crystallinum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab family gtpase 0.0
Complete
uagpf_v2_unigene17263 uagpf v2.0 739
• AutoFact: Rab1/RabD-family small GTPase n=7 Tax=Embryophyta RepID=A9SLS3_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab family gtpase 0.0
N-terminus
uagpf_v2_unigene17311 uagpf v2.0 653
• AutoFact: RecName: Full=Ras-related protein Rab7 gb|AAD22451.1|AF116243_1 RAS-related GTP-binding protein [Gossypium hirsutum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab7 -family small gtpase 0.0
N-terminus
uagpf_v2_unigene17327 uagpf v2.0 540
• AutoFact: putative protein phosphatase 2C 59 [Arabidopsis thaliana] sp|Q8RXV3.1|P2C59_ARATH RecName: Full=Probable protein phosphatase 2C 59; Short=AtPP2C59; AltName: Full=HopW1-1-interacting protein 2; AltName: Full=Protein phosphatase 2C WIN2; Short=PP2C WIN2 gb| 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein phosphatase 2c 0.0
C-terminus
uagpf_v2_unigene17964 uagpf v2.0 805
• AutoFact: Rab2/RabB-family small GTPase n=4 Tax=Physcomitrella patens subsp. patens RepID=A9SC62_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab2 -family small gtpase 0.0
C-terminus
uagpf_v2_unigene18630 uagpf v2.0 1410
• AutoFact: Ras-related protein RABB1c n=13 Tax=Spermatophyta RepID=RAB1C_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: gtp-binding rab2a like protein 0.0
Complete
uagpf_v2_unigene19022 uagpf v2.0 1282
• AutoFact: Ras-related protein RIC1 n=7 Tax=commelinids RepID=RIC1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab family gtpase 0.0
Complete
uagpf_v2_unigene19323 uagpf v2.0 1387
• AutoFact: Ras-related protein Rab-18 n=4 Tax=Poaceae RepID=B6TCF9_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ras-related protein rab-18 0.0
Complete
uagpf_v2_unigene19557 uagpf v2.0 1130
• AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab family gtpase 0.0
N-terminus
uagpf_v2_unigene25647 uagpf v2.0 229
• AutoFact: Rab family GTPase n=1 Tax=Selaginella moellendorffii RepID=D8RPN0_SELML 8.0e-33
• Blast2go: ras-related protein rab-18 1.01631e-40
unknown
uagpf_v2_unigene25850 uagpf v2.0 359
• AutoFact: Probable protein phosphatase 2C 59 n=5 Tax=Magnoliophyta RepID=P2C59_ARATH 0.0
• Blast2go: protein phosphatase 2c 0.0
unknown
uagpf_v2_unigene26696 uagpf v2.0 378
• AutoFact: small GTP-binding protein [Mesembryanthemum crystallinum] 0.0
• Blast2go: rab family gtpase 0.0
Putative coding
uagpf_v2_unigene27109 uagpf v2.0 308
• AutoFact: Ras-related protein Rab7 n=11 Tax=core eudicotyledons RepID=RAB7_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab gtpase homolog g3a 0.0
C-terminus
uagpf_v2_unigene27555 uagpf v2.0 306
• AutoFact: Protein phosphatase 2C n=2 Tax=Physcomitrella patens RepID=B1B5N7_9BRYO 0.0
• Blast2go: protein phosphatase 2c 0.0
Coding
uagpf_v2_unigene28877 uagpf v2.0 607
• AutoFact: Ras-related protein RABA4d n=2 Tax=Arabidopsis RepID=RAA4D_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rab11 -family small gtpase 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain