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Assembly Name: uagpf v2.0

Name: Signal recognition particle, SRP54 subunit, GTPase

Term: IPR000897  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene1669 uagpf v2.0 761
AutoFact: Signal recognition particle 54 kDa protein 2 n=11 Tax=Magnoliophyta RepID=SR542_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: signal recognition particle 54 kda protein 3 0.0
Putative N-terminus
uagpf_v2_unigene1856 uagpf v2.0 750
AutoFact: TATA box binding protein (TBP) associated factor (TAF)-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=SNF2 superfamily chromatin remodeling protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: tata-binding protein-associated factor 0.0
C-terminus
uagpf_v2_unigene2806 uagpf v2.0 423
AutoFact: Transcription factor AP2-EREBP n=1 Tax=Lotus japonicus RepID=B3IX32_LOTJA 7.0e-35
Blast2go: ethylene-responsive transcription factor 1a 0.0
unknown
uagpf_v2_unigene3060 uagpf v2.0 522
AutoFact: signal recognition particle receptor subunit alpha [Arabidopsis thaliana] emb|CAB79778.1| signal recognition particle receptor-like protein [Arabidopsis thaliana] gb|AAL57699.1| AT4g30600/F17I23_60 [Arabidopsis thaliana] gb|AAM91442.1| AT4g30600/F17I23_60 0.0
FL-Next: tr=Putative uncharacterized protein Sb01g050330; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: signal recognition particle receptor subunit alpha 0.0
Internal
uagpf_v2_unigene3464 uagpf v2.0 610
AutoFact: BR-signaling kinase 1 [Arabidopsis thaliana] sp|Q944A7.1|Y4523_ARATH RecName: Full=Probable serine/threonine-protein kinase At4g35230 gb|AAL27496.1|AF439824_1 AT4g35230/F23E12_210 [Arabidopsis thaliana] gb|AAM98327.1| At4g35230/F23E12_210 [Arabidopsis tha 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene4729 uagpf v2.0 427
AutoFact: ERF transcription factor n=1 Tax=Solanum tuberosum RepID=A4ZX83_SOLTU 1.0e-27
Blast2go: ethylene-responsive transcription factor 1a 0.0
unknown
uagpf_v2_unigene6784 uagpf v2.0 705
AutoFact: signal recognition particle receptor subunit alpha [Arabidopsis thaliana] emb|CAB79778.1| signal recognition particle receptor-like protein [Arabidopsis thaliana] gb|AAL57699.1| AT4g30600/F17I23_60 [Arabidopsis thaliana] gb|AAM91442.1| AT4g30600/F17I23_60 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: signal recognition particle receptor subunit alpha 0.0
N-terminus
uagpf_v2_unigene7466 uagpf v2.0 570
AutoFact: Signal recognition particle 54 kDa protein 2 n=11 Tax=Magnoliophyta RepID=SR542_SOLLC 0.0
Blast2go: signal recognition particle 54 kda protein 3 0.0
Putative coding
uagpf_v2_unigene7501 uagpf v2.0 505
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9I6D4_POPTR 0.0
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: tata box binding protein associated factor-like protein 0.0
Internal
uagpf_v2_unigene7971 uagpf v2.0 363
AutoFact: Transcription factor AP2-EREBP n=1 Tax=Lotus japonicus RepID=B3IX32_LOTJA 7.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ethylene-responsive transcription factor 1a 0.0
N-terminus
uagpf_v2_unigene8487 uagpf v2.0 1038
AutoFact: Ethylene-responsive-element-binding factor 12 n=1 Tax=Petunia x hybrida RepID=E3VVS1_PETHY 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ethylene responsive element binding factor 2 1.52593e-34
Putative Complete
uagpf_v2_unigene9564 uagpf v2.0 580
AutoFact: Cucumisin, putative n=1 Tax=Ricinus communis RepID=B9SRB6_RICCO 0.0
Blast2go: subtilisin-like protease-like 0.0
unknown
uagpf_v2_unigene9702 uagpf v2.0 350
AutoFact: subtilisin-like protein [Picea abies] 0.0
FL-Next: tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: subtilisin-like protease-like 0.0
C-terminus
uagpf_v2_unigene10142 uagpf v2.0 517
AutoFact: Sentrin/sumo-specific protease, senp8, putative n=1 Tax=Ricinus communis RepID=B9T1Y6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ulp1 protease family protein 0.0
N-terminus
uagpf_v2_unigene10511 uagpf v2.0 260
AutoFact: DUF3535 domain containing protein 0.0001
FL-Next: tr=Putative SNF2 domain-containing protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: tata box binding protein associated factor-like protein 0.0
Internal
uagpf_v2_unigene10863 uagpf v2.0 836
AutoFact: BR-signaling kinase 1 [Arabidopsis thaliana] sp|Q944A7.1|Y4523_ARATH RecName: Full=Probable serine/threonine-protein kinase At4g35230 gb|AAL27496.1|AF439824_1 AT4g35230/F23E12_210 [Arabidopsis thaliana] gb|AAM98327.1| At4g35230/F23E12_210 [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene10892 uagpf v2.0 1813
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ran-binding protein 0.0
Complete
uagpf_v2_unigene12162 uagpf v2.0 524
AutoFact: signal recognition particle receptor subunit alpha [Arabidopsis thaliana] emb|CAB79778.1| signal recognition particle receptor-like protein [Arabidopsis thaliana] gb|AAL57699.1| AT4g30600/F17I23_60 [Arabidopsis thaliana] gb|AAM91442.1| AT4g30600/F17I23_60 0.0
FL-Next: tr=Signal recognition particle receptor alpha subunit, putative; Ricinus communis (Castor bean). 0.0
Blast2go: signal recognition particle receptor subunit alpha 0.0
C-terminus
uagpf_v2_unigene13827 uagpf v2.0 505
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ran-binding protein 0.0
Internal
uagpf_v2_unigene14499 uagpf v2.0 476
AutoFact: Sentrin/sumo-specific protease, senp8, putative n=1 Tax=Ricinus communis RepID=B9T1Y6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ulp1 protease family protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain