Sustainpine_db
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Assembly Name: uagpf v2.0

Name: Zinc finger, RING-CH-type

Term: IPR011016  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene11236 uagpf v2.0 464
AutoFact: Membrane associated ring finger 1,8, putative n=1 Tax=Ricinus communis RepID=B9S8W6_RICCO 5.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: membrane associated ring finger 8.19023e-22
Complete
uagpf_v2_unigene11436 uagpf v2.0 1043
AutoFact: Zinc finger (C3HC4-type RING finger)protein-like n=4 Tax=Poaceae RepID=Q67WE0_ORYSJ 0.0
FL-Next: tr=Ssm4 protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene12510 uagpf v2.0 878
AutoFact: PREDICTED: similar to zinc finger (C3HC4-type RING finger) family protein n=1 Tax=Vitis vinifera RepID=UPI000198426A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein binding 0.0
C-terminus
uagpf_v2_unigene13477 uagpf v2.0 958
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPH2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein binding 0.0
C-terminus
uagpf_v2_unigene15619 uagpf v2.0 990
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] dbj|BAB09677.1| unnamed protein product [Arabidopsis thaliana] gb|AAP21185.1| At5g05830 [Arabidopsis thaliana] dbj|BAE99517.1| hypothetical protein [Arabidopsis thaliana] gb|AED90930.1| R 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 7.34841e-42
C-terminus
uagpf_v2_unigene17444 uagpf v2.0 718
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gb|AAO00881.1| putative protein [Arabidopsis thaliana] gb|AAP37815.1| At5g63780 [Arabidopsis thaliana] gb|AED97797.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] 4.0e-19
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: ring fyve phd zinc finger-containing protein 1.9099e-22
C-terminus
uagpf_v2_unigene18201 uagpf v2.0 624
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gb|AED91346.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ring fyve phd zinc finger-containing protein 0.0
C-terminus
uagpf_v2_unigene19327 uagpf v2.0 1259
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TWM5_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene25248 uagpf v2.0 245
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] dbj|BAB09677.1| unnamed protein product [Arabidopsis thaliana] gb|AAP21185.1| At5g05830 [Arabidopsis thaliana] dbj|BAE99517.1| hypothetical protein [Arabidopsis thaliana] gb|AED90930.1| R 1.0e-17
Blast2go: zinc finger 0.0
unknown
uagpf_v2_unigene25793 uagpf v2.0 319
AutoFact: Predicted protein n=11 Tax=Physcomitrella patens RepID=A9S6L2_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene27034 uagpf v2.0 384
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene27462 uagpf v2.0 310
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] ref|NP_974396.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] emb|CAB61981.1| putative protein [Arabidopsis thaliana] dbj|BAE98651.1| hypothetical protein [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring fyve phd zinc finger-containing protein 0.0
N-terminus
uagpf_v2_unigene27716 uagpf v2.0 286
AutoFact: Carbon catabolite repressor protein 4 homolog 5 n=2 Tax=Arabidopsis RepID=CCR4E_ARATH 0.0
Blast2go: carbon catabolite repressor protein 4-like 3 0.0
unknown
uagpf_v2_unigene27868 uagpf v2.0 425
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAC06154.1| expressed protein [Arabidopsis thaliana] gb|AAO00741.1| Unknown protein [Arabidopsis thaliana] gb|AAP13386.1| At2g45530 [Arabidopsis thaliana] gb|AEC10566.1| RING/U-box domain-cont 8.0e-33
Blast2go: protein 0.0
unknown
uagpf_v2_unigene27906 uagpf v2.0 442
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_851231.1| RING/U-box domain-containing protein [Arabidopsis thaliana] dbj|BAB08241.1| unnamed protein product [Arabidopsis thaliana] gb|AED97347.1| RING/U-box domain-containing protein [Ar 0.0
Blast2go: zinc finger (c3hc4-type ring finger) 0.0
Putative coding
uagpf_v2_unigene28786 uagpf v2.0 419
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gb|AAO42065.1| unknown protein [Arabidopsis thaliana] gb|AAO50515.1| unknown protein [Arabidopsis thaliana] gb|AEC07265.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thalia 0.0
Blast2go: ring fyve phd zinc finger-containing protein 0.0
unknown
uagpf_v2_unigene33765 uagpf v2.0 318
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AEE86323.1| RING/U-box domain-containing protein [Arabidopsis thaliana] 6.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring u-box domain-containing protein 1.32314e-29
Internal
uagpf_v2_unigene34788 uagpf v2.0 138
AutoFact: Endonuclease/exonuclease/phosphatase family protein-like n=2 Tax=Oryza sativa RepID=Q5ZE24_ORYSJ 4.00001e-40
Blast2go: protein 6.5861e-44
unknown
uagpf_v2_unigene37799 uagpf v2.0 295
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] ref|NP_974396.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] emb|CAB61981.1| putative protein [Arabidopsis thaliana] dbj|BAE98651.1| hypothetical protein [Arabidop 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: membrane associated ring finger 0.0
C-terminus
uagpf_v2_unigene38736 uagpf v2.0 447
AutoFact: Ssm4 protein, putative n=1 Tax=Ricinus communis RepID=B9RYE5_RICCO 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain