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Assembly Name: uagpf v2.0

Name: Radical SAM

Term: IPR007197  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene35606 uagpf v2.0 611
AutoFact: metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] gb|AAK63855.1|AF389282_1 AT5g40270/MSN9_170 [Arabidopsis thaliana] dbj|BAB10908.1| unnamed protein product [Arabidopsis thaliana] gb|AAM26721.1| AT5g40270/MSN9_170 [Arabi 0.0
FL-Next: tr=Catalytic, putative; Ricinus communis (Castor bean). 0.0
Blast2go: metal-dependent phosphohydrolase hd domain-containing protein 0.0
Putative N-terminus
uagpf_v2_unigene36024 uagpf v2.0 459
AutoFact: radical SAM domain-containing protein [Arabidopsis thaliana] gb|AAO41968.1| unknown protein [Arabidopsis thaliana] gb|AAO50541.1| unknown protein [Arabidopsis thaliana] gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal rna large subunit methyltransferase n 0.0
C-terminus
uagpf_v2_unigene36630 uagpf v2.0 289
AutoFact: CBS and transporter associated domain-containing protein [Arabidopsis thaliana] gb|AEC06308.1| CBS and transporter associated domain-containing protein [Arabidopsis thaliana] 4.0e-05
FL-Next: sp=DUF21 domain-containing protein At2g14520; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: hypothetical protein SELMODRAFT_76682 [Selaginella moellendorffii] 3.2212e-08
N-terminus
uagpf_v2_unigene36820 uagpf v2.0 452
AutoFact: Lipoyl synthase, mitochondrial n=1 Tax=Picea sitchensis RepID=LIAS_PICSI 0.0
Blast2go: lipoic acid synthase 0.0
unknown
uagpf_v2_unigene37969 uagpf v2.0 422
AutoFact: RecName: Full=tRNA wybutosine-synthesizing protein 1 homolog gb|AAN65027.1| putative oxidoreductase [Oryza sativa Japonica Group] gb|ABF99122.1| radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed [Oryza sativa Japonica 0.0
FL-Next: Isoform 2 of tRNA wybutosine-synthesizing protein 1 homolog OS=Oryza sativa subsp. japonica GN=TYW1 0.0
Blast2go: trna wybutosine-synthesizing protein 1 homolog 0.0
Internal
uagpf_v2_unigene38743 uagpf v2.0 452
AutoFact: Similar to CDK5 regulatory subunit-associated protein n=1 Tax=Nicotiana tabacum RepID=Q75WU8_TOBAC 1.0e-07
Blast2go: cdk5 regulatory subunit-associated protein 1.89647e-22
unknown
uagpf_v2_unigene40745 uagpf v2.0 413
AutoFact: radical SAM domain-containing protein [Arabidopsis thaliana] gb|AAO41968.1| unknown protein [Arabidopsis thaliana] gb|AAO50541.1| unknown protein [Arabidopsis thaliana] gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal rna large subunit methyltransferase n 0.0
Internal
uagpf_v2_unigene42117 uagpf v2.0 160
AutoFact: UPF0004 multi-domain protein 1.0e-24
Blast2go: cdk5 regulatory subunit-associated protein 1-like 1-like 0.0
unknown
uagpf_v2_unigene42586 uagpf v2.0 335
AutoFact: radical SAM domain-containing protein [Arabidopsis thaliana] gb|AAO41968.1| unknown protein [Arabidopsis thaliana] gb|AAO50541.1| unknown protein [Arabidopsis thaliana] gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal rna large subunit methyltransferase n 0.0
N-terminus
uagpf_v2_unigene44574 uagpf v2.0 427
AutoFact: FO synthase [Rhodopseudomonas palustris HaA2] gb|ABD09109.1| FO synthase subunit 2 / FO synthase subunit 1 [Rhodopseudomonas palustris HaA2] 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: fo synthase 0.0
Internal
uagpf_v2_unigene46076 uagpf v2.0 445
AutoFact: UPF0004 multi-domain protein 1.0e-24
FL-Next: tr=At1g72090/F28P5_4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cdk5 regulatory subunit-associated protein 1-like 1-like 0.0
N-terminus
uagpf_v2_unigene46902 uagpf v2.0 127
AutoFact: Molybdopterin cofactor synthesis protein A, putative n=1 Tax=Ricinus communis RepID=B9REL9_RICCO 0.0
FL-Next: sp=Molybdopterin biosynthesis protein CNX2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: molybdopterin biosynthesis protein cnx2-like 0.0
Internal
uagpf_v2_unigene49688 uagpf v2.0 386
AutoFact: biotin synthase [Brassica rapa subsp. pekinensis] 0.0
Blast2go: biotin synthase 0.0
unknown
uagpf_v2_unigene50523 uagpf v2.0 289
AutoFact: CBS and DUF21 domain-containing protein [Arabidopsis thaliana] dbj|BAD44531.1| unnamed protein product [Arabidopsis thaliana] gb|AEE83399.1| CBS and DUF21 domain-containing protein [Arabidopsis thaliana] 0.0
Blast2go: duf21 domain-containing protein at4g14240-like 0.0
Coding
uagpf_v2_unigene50999 uagpf v2.0 583
AutoFact: CBS and transporter associated domain-containing protein [Arabidopsis thaliana] gb|AEC06308.1| CBS and transporter associated domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=DUF21 domain-containing protein At4g33700; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cbs domain-containing protein 0.0
C-terminus
uagpf_v2_unigene51569 uagpf v2.0 453
AutoFact: CBS and transporter associated domain-containing protein n=2 Tax=Arabidopsis RepID=F4IGE5_ARATH 0.0
FL-Next: sp=DUF21 domain-containing protein At2g14520; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: duf21 domain-containing protein at2g14520-like 0.0
N-terminus
uagpf_v2_unigene52397 uagpf v2.0 423
AutoFact: CBS and transporter associated domain-containing protein [Arabidopsis thaliana] gb|AEC06308.1| CBS and transporter associated domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=DUF21 domain-containing protein At4g33700; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cbs domain-containing protein 0.0
C-terminus
uagpf_v2_unigene54987 uagpf v2.0 378
AutoFact: CBS and transporter associated domain-containing protein [Arabidopsis thaliana] gb|AEC06308.1| CBS and transporter associated domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=DUF21 domain-containing protein At4g33700; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cbs domain-containing protein 0.0
Internal
uagpf_v2_unigene55187 uagpf v2.0 385
AutoFact: CBS and transporter associated domain-containing protein [Arabidopsis thaliana] gb|AEC06308.1| CBS and transporter associated domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=DUF21 domain-containing protein At4g33700; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cbs domain-containing protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain