Sustainpine_db
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Assembly Name: uagpf v2.0

Name: AT hook, DNA-binding motif

Term: IPR017956  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene8443 uagpf v2.0 664
AutoFact: DUF616 domain containing protein 0.0
FL-Next: tr=AT5g42660/MJB21_3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: uncharacterized protein 0.0
C-terminus
uagpf_v2_unigene9463 uagpf v2.0 442
AutoFact: Ku70 homolog [Populus nigra] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent dna helicase 2 subunit ku70 0.0
Internal
uagpf_v2_unigene10669 uagpf v2.0 410
AutoFact: homeobox protein HAT3.1 [Arabidopsis thaliana] sp|Q04996.3|HAT31_ARATH RecName: Full=Homeobox protein HAT3.1 dbj|BAC41784.1| putative homeobox protein HAT3.1 [Arabidopsis thaliana] gb|AAO64900.1| At3g19510 [Arabidopsis thaliana] gb|AEE76250.1| homeobox pr 0.0
FL-Next: sp=Pathogenesis-related homeodomain protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: homeobox protein 0.0
Internal
uagpf_v2_unigene11123 uagpf v2.0 1193
AutoFact: Unassigned protein
Blast2go: nucleic acid binding 0.0
Putative coding
uagpf_v2_unigene11296 uagpf v2.0 769
AutoFact: Histone H1 WH1B.1 n=1 Tax=Triticum aestivum RepID=Q9XHL9_WHEAT 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h1-like protein 1.26117e-42
Putative Complete
uagpf_v2_unigene11737 uagpf v2.0 464
AutoFact: DUF248 domain containing protein 3.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
uagpf_v2_unigene11992 uagpf v2.0 599
AutoFact: DUF296 domain containing protein 1.0e-35
Blast2go: dna-binding protein escarola-like 0.0
Putative coding
uagpf_v2_unigene12154 uagpf v2.0 570
AutoFact: AT hook motif DNA-binding family protein [Arabidopsis thaliana] ref|NP_850215.1| AT hook motif DNA-binding family protein [Arabidopsis thaliana] ref|NP_973590.1| AT hook motif DNA-binding family protein [Arabidopsis thaliana] ref|NP_001118437.1| AT hook m 9.94922e-44
Blast2go: at hook motif dna-binding family protein 0.0
Coding
uagpf_v2_unigene12613 uagpf v2.0 677
AutoFact: Alba multi-domain protein 6.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: alba-like protein c9orf23 homolog 0.0
N-terminus
uagpf_v2_unigene12953 uagpf v2.0 312
AutoFact: Putative ripening regulated protein [Oryza sativa Japonica Group] gb|ABF94378.1| MatE family protein, expressed [Oryza sativa Japonica Group] 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein TRANSPARENT TESTA 12 0.0
Internal
uagpf_v2_unigene13804 uagpf v2.0 671
AutoFact: DNA-3-methyladenine glycosylase II [Arabidopsis thaliana] emb|CAB42917.1| putative DNA-3-methyladenine glycosidase [Arabidopsis thaliana] dbj|BAC43662.1| putative DNA-3-methyladenine glycosidase [Arabidopsis thaliana] gb|AAO63339.1| At3g50880 [Arabidopsis 0.0
Blast2go: gpd base excision dna repair family protein 0.0
Coding
uagpf_v2_unigene13810 uagpf v2.0 915
AutoFact: SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Arabidopsis thaliana] sp|Q9FT92.2|Y5843_ARATH RecName: Full=Uncharacterized protein At5g08430 gb|ACF06124.1| At5g08430 [Arabidopsis thaliana] gb|AED91300.1| SWIB/MDM2 and Plus-3 and GYF domain-contai 1.0e-31
FL-Next: sp=Zinc finger CCCH domain-containing protein 44; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 44-like 0.0
Internal
uagpf_v2_unigene13969 uagpf v2.0 556
AutoFact: Putative microtubule-associated protein, identical [Solanum demissum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 65-kda microtubule-associated protein 3-like 0.0
N-terminus
uagpf_v2_unigene14000 uagpf v2.0 627
AutoFact: Unassigned protein
unknown
uagpf_v2_unigene14063 uagpf v2.0 694
AutoFact: Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTA3_PHYPA 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h1-like protein 1.629e-26
N-terminus
uagpf_v2_unigene14371 uagpf v2.0 1455
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RJW1_RICCO 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-binding protein escarola-like 0.0
C-terminus
uagpf_v2_unigene14519 uagpf v2.0 1482
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 4.0e-27
FL-Next: tr=Putative histone H1; Pinus pinaster (Maritime pine). 0.0
Blast2go: histone h1 3.06217e-31
Complete
uagpf_v2_unigene15167 uagpf v2.0 371
AutoFact: Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9R7N6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: multidrug resistance 0.0
C-terminus
uagpf_v2_unigene15221 uagpf v2.0 731
AutoFact: AT-hook DNA-binding protein [Catharanthus roseus] 4.0e-30
FL-Next: sp=Formin-like protein 6; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 2.55616e-34
Internal
uagpf_v2_unigene15432 uagpf v2.0 786
AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 0.0
Blast2go: dna binding 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain