Sustainpine_db
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Assembly Name: uagpf v2.0

Name: RNA polymerase, alpha subunit

Term: IPR000722  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene2664 uagpf v2.0 649
AutoFact: zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] dbj|BAB11046.1| unnamed protein product [Arabidopsis thaliana] gb|AED96154.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 48 0.0
Putative C-terminus
uagpf_v2_unigene8613 uagpf v2.0 388
AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii largest subunit 0.0
Internal
uagpf_v2_unigene9868 uagpf v2.0 573
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Physcomitrella patens subsp. patens RepID=A9REZ6_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin-activating enzyme e1 0.0
N-terminus
uagpf_v2_unigene10164 uagpf v2.0 295
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TI03_VITVI 2.0e-39
FL-Next: sp=DNA-directed RNA polymerase; Pinus pinaster (Maritime pine). Plastid; Chloroplast. 0.0
Blast2go: dna-directed rna polymerase i subunit rpa1-like 1.4013e-45
Internal
uagpf_v2_unigene13974 uagpf v2.0 992
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 3.9937e-43
Blast2go: dna-directed rna polymerase 0.0
Coding
uagpf_v2_unigene15594 uagpf v2.0 675
AutoFact: PREDICTED: similar to cAMP response element-binding protein 5 n=1 Tax=Hydra magnipapillata RepID=UPI0001925AA1 2.0e-07
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: camp response element-binding protein 5 5.12823e-09
Internal
uagpf_v2_unigene18130 uagpf v2.0 1353
AutoFact: DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
uagpf_v2_unigene18659 uagpf v2.0 1061
AutoFact: Ferritin n=1 Tax=Picea sitchensis RepID=C0PRI0_PICSI 0.0
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chloroplast precursor 0.0
Complete
uagpf_v2_unigene25631 uagpf v2.0 323
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Physcomitrella patens subsp. patens RepID=A9REZ6_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin-activating enzyme e1 0.0
Internal
uagpf_v2_unigene27291 uagpf v2.0 577
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase iii subunit rpc1-like 0.0
Internal
uagpf_v2_unigene29363 uagpf v2.0 351
AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9GM06_POPTR 2.0e-39
FL-Next: sp=DNA-directed RNA polymerase; Pinus monophylla. Plastid; Chloroplast. 0.0
Blast2go: rna polymerase iv subunit 5.60519e-45
Internal
uagpf_v2_unigene29699 uagpf v2.0 281
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase iii subunit rpc1-like 0.0
Internal
uagpf_v2_unigene30937 uagpf v2.0 310
AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase ii subunit rpb1-like 0.0
N-terminus
uagpf_v2_unigene33741 uagpf v2.0 255
AutoFact: zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] dbj|BAB11046.1| unnamed protein product [Arabidopsis thaliana] gb|AED96154.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 63; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 48 0.0
C-terminus
uagpf_v2_unigene34225 uagpf v2.0 376
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Populus trichocarpa RepID=B9GGR5_POPTR 3.00018e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin-activating enzyme e1 0.0
Internal
uagpf_v2_unigene34623 uagpf v2.0 321
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=Q2TUM9_9CONI 3.0e-24
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase iii large subunit 3.33949e-28
Internal
uagpf_v2_unigene37795 uagpf v2.0 422
AutoFact: DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
uagpf_v2_unigene39555 uagpf v2.0 413
AutoFact: DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI 0.0
FL-Next: sp=DNA-directed RNA polymerase; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
Internal
uagpf_v2_unigene42614 uagpf v2.0 435
AutoFact: DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta'' 2; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). Plastid; Chloroplast. 0.0
Internal
uagpf_v2_unigene46091 uagpf v2.0 321
AutoFact: Ubiquitin-activating enzyme E1 (Fragment) n=1 Tax=Vitis vinifera RepID=D7SJT2_VITVI 9.0e-35
FL-Next: sp=Ubiquitin-activating enzyme E1 2; Triticum aestivum (Wheat). 0.0
Blast2go: ubiquitin-activating enzyme e1 1.74298e-34
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain