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Assembly Name: uagpf v2.0

Name: Zinc finger, C3HC4 RING-type

Term: IPR018957  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene39895 uagpf v2.0 318
• AutoFact: E3 ubiquitin-protein ligase CIP8 [Arabidopsis thaliana] sp|Q9SPL2.1|CIP8_ARATH RecName: Full=E3 ubiquitin-protein ligase CIP8; AltName: Full=COP1-interacting protein 8 gb|AAD56636.1|AF162150_1 COP1-interacting protein CIP8 [Arabidopsis thaliana] dbj|BAA97 6.0e-26
• Blast2go: zinc finger 2.45808e-31
Coding
uagpf_v2_unigene39954 uagpf v2.0 529
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974832.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAM97093.1| RING finger-like protein [Arabidopsis thaliana] gb|AAT47817.1| At5g24870 [Arabidopsis thaliana] gb|AED9 2.99878e-43
• Blast2go: ring u-box domain-containing protein 0.0
Putative coding
uagpf_v2_unigene39990 uagpf v2.0 293
• AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9T6X0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ring-h2 finger protein atl13 0.0
Internal
uagpf_v2_unigene40042 uagpf v2.0 542
• AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MYK9_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: swi snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 3-like 2-like 0.0
Internal
uagpf_v2_unigene40157 uagpf v2.0 421
• AutoFact: putative E3 ubiquitin-protein ligase ARI1 [Arabidopsis thaliana] sp|Q949V6.1|ARI1_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase ARI1; AltName: Full=ARIADNE-like protein ARI1; AltName: Full=Protein ariadne homolog 1 gb|AAK92801.1| unknown protei 1.0e-35
• FL-Next: sp=Probable E3 ubiquitin-protein ligase ARI1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: e3 ubiquitin-protein ligase ari1 1.35926e-43
Internal
uagpf_v2_unigene40172 uagpf v2.0 446
• AutoFact: Copine III-like protein (Fragment) n=1 Tax=Picea abies RepID=B2KZF7_PICAB 2.8026e-45
• Blast2go: e3 ubiquitin-protein ligase rglg2 0.0
unknown
uagpf_v2_unigene40178 uagpf v2.0 341
• AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9T2M9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
uagpf_v2_unigene40558 uagpf v2.0 323
• AutoFact: COP1 homolog [Solanum lycopersicum] 5.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 1.4013e-45
Putative C-terminus
uagpf_v2_unigene40563 uagpf v2.0 350
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
uagpf_v2_unigene40600 uagpf v2.0 293
• AutoFact: calmodulin-binding receptor-like cytoplasmic kinase 2 [Arabidopsis thaliana] sp|Q8VZJ9.1|Y4330_ARATH RecName: Full=Probable leucine-rich repeat receptor-like protein kinase At4g00330 gb|AAL36420.1| unknown protein [Arabidopsis thaliana] gb|AAM91688.1| unk 0.0
• Blast2go: probable leucine-rich repeat receptor-like protein kinase at4g00330-like 0.0
Coding
uagpf_v2_unigene40611 uagpf v2.0 497
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RSE9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized protein loc100258626 0.0
Putative Complete
uagpf_v2_unigene40679 uagpf v2.0 431
• AutoFact: ring zinc finger protein-like protein [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: cleavage and polyadenylation specificity 0.0
Internal
uagpf_v2_unigene40707 uagpf v2.0 310
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T0P5_RICCO 1.4013e-45
• Blast2go: zinc finger 0.0
Coding
uagpf_v2_unigene40840 uagpf v2.0 323
• AutoFact: Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gb|AAL60025.1| unknown protein [Arabidopsis thaliana] gb|AAM20342.1| unknown protein [Arabidopsis thaliana] gb|AEE81964.1| Transcription factor jumonji (jmjC) domain-cont 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: transcription factor jumonji domain-containing protein 0.0
Internal
uagpf_v2_unigene40857 uagpf v2.0 318
• AutoFact: Tyrosine specific protein phosphatase family protein n=2 Tax=Zea mays RepID=B6TFU8_MAIZE 0.0
• Blast2go: tyrosine specific protein phosphatase family protein 0.0
unknown
uagpf_v2_unigene41013 uagpf v2.0 366
• AutoFact: 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 3-hydroxyisobutyrate dehydrogenase 0.0
Putative N-terminus
uagpf_v2_unigene41037 uagpf v2.0 372
• AutoFact: Carbon catabolite repressor protein 4 homolog 5 n=2 Tax=Arabidopsis RepID=CCR4E_ARATH 0.0
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: carbon catabolite repressor protein 4-like 3 0.0
Internal
uagpf_v2_unigene41190 uagpf v2.0 396
• AutoFact: putative zinc finger protein [Oryza sativa Japonica Group] 6.0e-33
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: zinc finger 8.30269e-42
Internal
uagpf_v2_unigene41202 uagpf v2.0 390
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_851231.1| RING/U-box domain-containing protein [Arabidopsis thaliana] dbj|BAB08241.1| unnamed protein product [Arabidopsis thaliana] gb|AED97347.1| RING/U-box domain-containing protein [Ar 0.0
• FL-Next: tr=Zinc finger (C3HC4 type RING finger) family protein; Musa acuminata (Banana) (Musa cavendishii). 0.0
• Blast2go: zinc finger (c3hc4-type ring finger) 0.0
Internal
uagpf_v2_unigene41375 uagpf v2.0 345
• AutoFact: RING-H2 finger protein ATL58 [Arabidopsis thaliana] sp|Q570X5.1|ATL58_ARATH RecName: Full=RING-H2 finger protein ATL58 dbj|BAD94869.1| hypothetical protein [Arabidopsis thaliana] gb|AEE31599.1| RING-H2 finger protein ATL58 [Arabidopsis thaliana] 7.0e-34
• FL-Next: tr=Putative uncharacterized protein Sb04g022820; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
• Blast2go: ring-h2 finger protein atl7-like 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain