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Assembly Name: uagpf v2.0

Name: DNA ligase, ATP-dependent, conserved site

Term: IPR016059  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene47598 uagpf v2.0 426
AutoFact: pfam08755, YccV-like, Hemimethylated DNA-binding protein YccV like 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uvrb uvrc motif-containing protein 0.0
Internal
uagpf_v2_unigene47930 uagpf v2.0 360
AutoFact: serine/threonine-prot (ISS) [Ostreococcus tauri] emb|CAL57156.1| serine/threonine-prot (ISS) [Ostreococcus tauri] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: mitotic checkpoint serine threonine-protein kinase bub1-like 0.0
Internal
uagpf_v2_unigene49868 uagpf v2.0 594
AutoFact: AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L0Z5_MALDO 4.0e-06
Blast2go: unknown [Picea sitchensis] 1.64848e-11
Coding
uagpf_v2_unigene51245 uagpf v2.0 430
AutoFact: Ethylene-responsive element-binding protein n=1 Tax=Medicago truncatula RepID=Q2I2S8_MEDTR 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ap2 erf domain-containing transcription factor 5.90335e-32
N-terminus
uagpf_v2_unigene51313 uagpf v2.0 688
AutoFact: Ethylene-responsive element binding factor-like protein n=5 Tax=Picea sitchensis RepID=E0ZGY9_PICSI 4.2039e-45
FL-Next: tr=Ethylene-responsive element binding factor-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ethylene-responsive element binding factor-like protein 0.0
C-terminus
uagpf_v2_unigene51414 uagpf v2.0 449
AutoFact: AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L0Z5_MALDO 4.0e-06
Blast2go: unknown [Picea sitchensis] 1.64848e-11
Coding
uagpf_v2_unigene51940 uagpf v2.0 396
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tetratricopeptide repeat domain-containing protein 2.8026e-45
Putative C-terminus
uagpf_v2_unigene52092 uagpf v2.0 622
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Putative N-terminus
uagpf_v2_unigene52392 uagpf v2.0 499
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
Blast2go: chromatin remodeling complex subunit 0.0
unknown
uagpf_v2_unigene52471 uagpf v2.0 301
AutoFact: Ethylene-responsive transcription factor 4 n=4 Tax=Nicotiana RepID=ERF4_NICSY 3.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ethylene-responsive transcription factor 1.45762e-26
N-terminus
uagpf_v2_unigene53292 uagpf v2.0 356
AutoFact: Ethylene-responsive element binding factor-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZDA4_PICSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ethylene-responsive element binding factor-like protein 0.0
N-terminus
uagpf_v2_unigene53774 uagpf v2.0 355
AutoFact: FAP multi-domain protein 8.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100809777 7.79977e-41
Internal
uagpf_v2_unigene53994 uagpf v2.0 506
AutoFact: Unassigned protein
Blast2go: tpr domain protein 5.31497e-29
unknown
uagpf_v2_unigene54049 uagpf v2.0 360
AutoFact: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=A9PLA3_POPTR 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ap2 erf domain-containing transcription factor 4.70836e-42
N-terminus
uagpf_v2_unigene54242 uagpf v2.0 553
AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 3.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tpr domain protein 0.0
C-terminus
uagpf_v2_unigene54732 uagpf v2.0 403
AutoFact: FAP multi-domain protein 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100784254 1.70422e-38
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain