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Assembly Name: uagpf v2.0

Name: Chromo domain/shadow

Term: IPR000953  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene333 uagpf v2.0 546
AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
unknown
uagpf_v2_unigene615 uagpf v2.0 903
AutoFact: mortality factor 4-like protein 1 [Arabidopsis thaliana] gb|AAK59778.1| AT4g37280/C7A10_80 [Arabidopsis thaliana] gb|AAM98302.1| At4g37280/C7A10_80 [Arabidopsis thaliana] gb|AEE86776.1| mortality factor 4-like protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mortality factor 4-like protein 1 0.0
C-terminus
uagpf_v2_unigene746 uagpf v2.0 293
AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Peperomia caperata RepID=Q56GE9_PEPCA 3.0e-32
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 3.62936e-43
Putative N-terminus
uagpf_v2_unigene848 uagpf v2.0 309
AutoFact: Histone acetyltransferase n=5 Tax=rosids RepID=B9H794_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone acetyltransferase 0.0
C-terminus
uagpf_v2_unigene854 uagpf v2.0 679
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTS9_ELAGV 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Zea mays (Maize). 0.0
Blast2go: DNA (cytosine-5)-methyltransferase 0.0
Internal
uagpf_v2_unigene1214 uagpf v2.0 474
AutoFact: PRP38 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna-splicing factor 38b 0.0
Internal
uagpf_v2_unigene1721 uagpf v2.0 533
AutoFact: protein kinase family protein [Musa balbisiana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein kinase family protein 0.0
Internal
uagpf_v2_unigene2033 uagpf v2.0 691
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
N-terminus
uagpf_v2_unigene2559 uagpf v2.0 502
AutoFact: Hcr2-p3 n=2 Tax=Solanum pimpinellifolium RepID=Q4G2V8_SOLPI 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hcr2- 3.6869e-18
Internal
uagpf_v2_unigene2766 uagpf v2.0 501
AutoFact: Adaptin ear-binding coat-associated protein 1 n=2 Tax=Andropogoneae RepID=B4FRD1_MAIZE 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene2933 uagpf v2.0 338
AutoFact: PRP38 multi-domain protein 0.0
Blast2go: pre-mrna-splicing factor 38b 0.0
unknown
uagpf_v2_unigene3041 uagpf v2.0 1342
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTS9_ELAGV 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase CMT3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: DNA (cytosine-5)-methyltransferase 0.0
C-terminus
uagpf_v2_unigene3883 uagpf v2.0 551
AutoFact: Ankyrin repeat domain protein, putative n=1 Tax=Ricinus communis RepID=B9RF69_RICCO 0.0
FL-Next: sp=Probable signal recognition particle 43 kDa protein, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: ankyrin repeat domain 0.0
C-terminus
uagpf_v2_unigene4037 uagpf v2.0 403
AutoFact: hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] emb|CAB86039.1| putative protein [Arabidopsis thaliana] gb|AED90527.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] 6.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100812941 1.68156e-44
C-terminus
uagpf_v2_unigene4164 uagpf v2.0 815
AutoFact: Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9S058_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cinnamoyl- reductase 0.0
C-terminus
uagpf_v2_unigene4176 uagpf v2.0 642
AutoFact: putative chromodomain-helicase-DNA-binding protein [Arabidopsis thaliana] 0.0
Blast2go: chromatin remodeling complex subunit 0.0
unknown
uagpf_v2_unigene4709 uagpf v2.0 653
AutoFact: Ankyrin repeat domain protein, putative n=1 Tax=Ricinus communis RepID=B9RF69_RICCO 0.0
Blast2go: ankyrin repeat domain 0.0
unknown
uagpf_v2_unigene4798 uagpf v2.0 610
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Putative N-terminus
uagpf_v2_unigene5143 uagpf v2.0 979
AutoFact: PRP38 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: pre-mrna-splicing factor 38b 0.0
C-terminus
uagpf_v2_unigene5332 uagpf v2.0 371
AutoFact: putative helicase [Arabidopsis thaliana] 0.0
Blast2go: dna helicase ino80-like 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain