Sustainpine_db
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Assembly Name: uagpf v2.0

Name: Chromo domain/shadow

Term: IPR000953  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene47811 uagpf v2.0 357
• AutoFact: Unassigned protein
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: retrotransposon like protein 0.0
C-terminus
uagpf_v2_unigene47903 uagpf v2.0 272
• AutoFact: SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TTS1_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: chromodomain-helicase-dna-binding protein 2-like 0.0
Internal
uagpf_v2_unigene47994 uagpf v2.0 394
• AutoFact: OSIGBa0093M15.5 protein n=1 Tax=Oryza sativa RepID=Q01MK0_ORYSA 1.0e-25
• FL-Next: tr=OSIGBa0093M15.5 protein; Oryza sativa (Rice). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 2.01081e-29
Internal
uagpf_v2_unigene48329 uagpf v2.0 331
• AutoFact: putative chromodomain-helicase-DNA-binding protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Chromodomain helicase DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Internal
uagpf_v2_unigene48380 uagpf v2.0 387
• AutoFact: putative transcriptional regulator [Arabidopsis thaliana] 0.0
• FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Internal
uagpf_v2_unigene48584 uagpf v2.0 333
• AutoFact: Unassigned protein
• FL-Next: tr=H0515C11.8 protein; Oryza sativa (Rice). 0.0
• Blast2go: retrotransposon unclassified 6.42801e-12
Putative C-terminus
uagpf_v2_unigene48843 uagpf v2.0 317
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QS58_ORYSJ 3.0e-11
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 3.6729e-13
Internal
uagpf_v2_unigene49067 uagpf v2.0 400
• AutoFact: Putative zinc finger protein n=2 Tax=Oryza sativa Japonica Group RepID=Q6L4V6_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribosomal protein l11 methyltransferase 0.0
C-terminus
uagpf_v2_unigene49514 uagpf v2.0 438
• AutoFact: Putative copia-type polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FWI2_ORYSJ 4.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: reverse transcriptase 3.31718e-37
N-terminus
uagpf_v2_unigene49801 uagpf v2.0 429
• AutoFact: OSJNBa0017P10.4 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XQ51_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: gag-pol polyprotein 0.0
Putative Complete
uagpf_v2_unigene50246 uagpf v2.0 398
• AutoFact: Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9S058_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: cinnamoyl- reductase 0.0
N-terminus
uagpf_v2_unigene50336 uagpf v2.0 386
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 4.0e-34
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: reverse transcriptase 4.92852e-35
Putative Complete
uagpf_v2_unigene50422 uagpf v2.0 296
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 8.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: reverse transcriptase 4.2039e-45
Internal
uagpf_v2_unigene50635 uagpf v2.0 194
• AutoFact: OSJNBa0085C10.29 protein n=1 Tax=Oryza sativa RepID=Q5JPW2_ORYSA 4.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 3.44207e-20
Putative Complete
uagpf_v2_unigene50648 uagpf v2.0 247
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein n=1 Tax=Medicago truncatula RepID=Q2HW87_MEDTR 3.0e-07
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 1.61936e-10
Internal
uagpf_v2_unigene50732 uagpf v2.0 380
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 9.19217e-25
C-terminus
uagpf_v2_unigene51105 uagpf v2.0 541
• AutoFact: ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9RJZ6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pleiotropic drug resistance protein 0.0
C-terminus
uagpf_v2_unigene51324 uagpf v2.0 384
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Poaceae RepID=Q2QUR6_ORYSJ 3.0e-35
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 5.9699e-35
N-terminus
uagpf_v2_unigene51418 uagpf v2.0 358
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Medicago truncatula RepID=Q2HW78_MEDTR 5.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
uagpf_v2_unigene51758 uagpf v2.0 218
• AutoFact: polyprotein [Candida glabrata] 3.0e-18
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: gag-pol polyprotein 1.18877e-21
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain