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Assembly Name: uagpf v2.0

Name: Chromo domain/shadow

Term: IPR000953  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene5507 uagpf v2.0 932
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTS9_ELAGV 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Zea mays (Maize). 0.0
Blast2go: dna (cytosine-5)-methyltransferase cmt3-like 0.0
C-terminus
uagpf_v2_unigene5585 uagpf v2.0 720
AutoFact: Histone acetyltransferase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJM4_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone acetyltransferase 0.0
C-terminus
uagpf_v2_unigene5753 uagpf v2.0 704
AutoFact: Hydroxyproline-rich glycoprotein family protein n=3 Tax=Arabidopsis RepID=Q9LZ00_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hydroxyproline-rich glycoprotein family protein 0.0
Putative N-terminus
uagpf_v2_unigene6060 uagpf v2.0 751
AutoFact: S15/NS1, RNA-binding protein [Arabidopsis thaliana] gb|AAF82151.1|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi|6730725 from Arabidopsis thaliana BAC T21F11 gb|AC018849 and contains a Ribosomal Protein S15 PF|00312 domain gb|AAK32782.1 0.0
FL-Next: tr=Structural constituent of ribosome, putative; Ricinus communis (Castor bean). 0.0
Blast2go: s15 rna-binding protein 0.0
C-terminus
uagpf_v2_unigene7118 uagpf v2.0 420
AutoFact: Cinnamoyl-CoA reductase n=1 Tax=Camellia oleifera RepID=C3VPA5_9ERIC 0.0
Blast2go: cinnamoyl- reductase 0.0
unknown
uagpf_v2_unigene7260 uagpf v2.0 2398
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Complete
uagpf_v2_unigene7487 uagpf v2.0 398
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 2.0e-31
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: reverse transcriptase 1.56398e-40
Internal
uagpf_v2_unigene7884 uagpf v2.0 373
AutoFact: putative chromodomain-helicase-DNA-binding protein [Arabidopsis thaliana] 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Coding
uagpf_v2_unigene7940 uagpf v2.0 510
AutoFact: switch 2 [Arabidopsis thaliana] gb|AEE27606.1| switch 2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: snf2 super family 0.0
Internal
uagpf_v2_unigene8082 uagpf v2.0 854
AutoFact: Histone acetyltransferase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RAZ9_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone acetyltransferase 0.0
C-terminus
uagpf_v2_unigene8847 uagpf v2.0 333
AutoFact: CHD3-type chromatin-remodeling factor PICKLE [Arabidopsis thaliana] sp|Q9S775.1|PKL_ARATH RecName: Full=CHD3-type chromatin-remodeling factor PICKLE; AltName: Full=Protein GYMNOS gb|AAF07084.1|AF185578_1 GYMNOS/PICKLE [Arabidopsis thaliana] gb|AAF13875.1| 0.0
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
uagpf_v2_unigene9164 uagpf v2.0 352
AutoFact: Polynucleotidyl transferase, Ribonuclease H fold (Fragment) n=1 Tax=Medicago truncatula RepID=A2Q4N7_MEDTR 1.0e-22
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 2.03831e-26
Internal
uagpf_v2_unigene9356 uagpf v2.0 635
AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Complete
uagpf_v2_unigene9508 uagpf v2.0 405
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q53K71_ORYSJ 3.0e-18
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon ty3-gypsy subclass 2.83155e-21
Putative N-terminus
uagpf_v2_unigene9623 uagpf v2.0 541
AutoFact: Probable L-type lectin-domain containing receptor kinase S.5 n=2 Tax=Arabidopsis RepID=LRKS5_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable l-type lectin-domain containing receptor kinase -like 0.0
Internal
uagpf_v2_unigene9797 uagpf v2.0 588
AutoFact: protein kinase protein with adenine nucleotide alpha hydrolases-like domain-containing protein [Arabidopsis thaliana] dbj|BAB01918.1| unnamed protein product [Arabidopsis thaliana] gb|AEE75399.1| protein kinase protein with adenine nucleotide alpha hydrol 0.0
Blast2go: atp binding 0.0
unknown
uagpf_v2_unigene10165 uagpf v2.0 264
AutoFact: pfam00665, rve, Integrase core domain 5.0e-12
FL-Next: tr=Gag-pol polyprotein, putative; Asparagus officinalis (Garden asparagus). 0.0
Blast2go: gag-pol polyprotein 0.0
C-terminus
uagpf_v2_unigene10237 uagpf v2.0 339
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: hypothetical protein VITISV_016106 [Vitis vinifera] 1.64214e-16
Putative N-terminus
uagpf_v2_unigene10265 uagpf v2.0 313
AutoFact: WS0292.B21_N03 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0292_N03 5, mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: protein 1.82169e-44
Internal
uagpf_v2_unigene10526 uagpf v2.0 498
AutoFact: Histone acetyltransferase n=5 Tax=rosids RepID=B9H794_POPTR 0.0
Blast2go: histone acetyltransferase 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain