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Assembly Name: uagpf v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene49 uagpf v2.0 378
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T2X9_RICCO 0.0
FL-Next: sp=Pentatricopeptide repeat-containing protein At3g59040; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
uagpf_v2_unigene50 uagpf v2.0 1522
AutoFact: ALG2-interacting protein X [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: alg2-interacting protein x 0.0
Complete
uagpf_v2_unigene229 uagpf v2.0 606
AutoFact: RecName: Full=Cytochrome P450 704C1; AltName: Full=Cytochrome P450 CYPD gb|AAX07434.1| cytochrome P450 CYPD [Pinus taeda] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cytochrome p450 0.0
Internal
uagpf_v2_unigene380 uagpf v2.0 828
AutoFact: putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group] dbj|BAD30726.1| putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Blast2go: probable serine threonine-protein kinase at1g54610-like 0.0
C-terminus
uagpf_v2_unigene506 uagpf v2.0 371
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing 2.14399e-43
Internal
uagpf_v2_unigene552 uagpf v2.0 350
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22470, mitochondrial; Flags: Precursor gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana] dbj|BAD43091.1| 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 1.42358e-29
Internal
uagpf_v2_unigene555 uagpf v2.0 667
AutoFact: Bipolar kinesin KRP-130, putative n=1 Tax=Ricinus communis RepID=B9SWG6_RICCO 0.0
FL-Next: sp=Probable 125 kDa kinesin-related protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: 125 kda kinesin-related 0.0
N-terminus
uagpf_v2_unigene567 uagpf v2.0 559
AutoFact: Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] gb|AAG51102.1|AC025295_10 unknown protein [Arabidopsis thaliana] gb|AAK59597.1| unknown protein [Arabidopsis thaliana] gb|AAL34230.1| unknown protein [Arabidopsis thaliana] gb|AE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized membrane 0.0
Internal
uagpf_v2_unigene633 uagpf v2.0 1451
AutoFact: CBL-interacting protein kinase 3 n=8 Tax=rosids RepID=A0MNJ1_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cbl-interacting protein kinase 0.0
C-terminus
uagpf_v2_unigene683 uagpf v2.0 612
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE 2.8026e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat protein 0.0
C-terminus
uagpf_v2_unigene684 uagpf v2.0 900
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
Putative C-terminus
uagpf_v2_unigene687 uagpf v2.0 497
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein chloroplastic-like 0.0
Internal
uagpf_v2_unigene700 uagpf v2.0 334
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76753.1| pentatric 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene941 uagpf v2.0 473
AutoFact: RNA-binding KH domain-containing protein [Arabidopsis thaliana] ref|NP_197031.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana] dbj|BAF00580.1| hypothetical protein [Arabidopsis thaliana] dbj|BAF01176.1| hypothetical protein [Arabidopsis 0.0
Blast2go: kh domain-containing protein at4g18375-like 0.0
Putative coding
uagpf_v2_unigene1077 uagpf v2.0 1286
AutoFact: Pentatricopeptide repeat protein 79 (Fragment) n=2 Tax=Funariaceae RepID=F5CAE5_FUNHY 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Putative N-terminus
uagpf_v2_unigene1092 uagpf v2.0 1249
AutoFact: ankyrin repeat-rich protein [Solanum tuberosum] 0.0
FL-Next: sp=Probable E3 ubiquitin-protein ligase XBOS35; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: ankyrin repeat-rich protein 0.0
Putative C-terminus
uagpf_v2_unigene1113 uagpf v2.0 413
AutoFact: DUF296 domain containing protein 3.0e-25
Blast2go: dna-binding protein escarola-like 7.31837e-29
Coding
uagpf_v2_unigene1170 uagpf v2.0 731
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9STF9.1|PP266_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46870 emb|CAB51178.1| putative protein [Arabidopsis thaliana] dbj|BAC42475.1| unknown protein [Arabido 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
C-terminus
uagpf_v2_unigene1270 uagpf v2.0 436
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71060, mitochondrial; Flags: Precursor gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein mitochondrial-like 0.0
Internal
uagpf_v2_unigene1324 uagpf v2.0 469
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62470, mitochondrial; Flags: Precursor emb|CAB82961.1| putative protein [Arabidopsis thaliana] gb|AAQ6 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain