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Assembly Name: uagpf v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene2574 uagpf v2.0 666
AutoFact: Alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SUZ6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nadp-dependent alkenal double bond reductase p2 0.0
C-terminus
uagpf_v2_unigene2687 uagpf v2.0 495
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Putative C-terminus
uagpf_v2_unigene2752 uagpf v2.0 612
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9FZD1.1|PPR58_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g26460, mitochondrial; Flags: Precursor gb|AAF98572.1|AC013427_15 Contains similarity to a hypothetical 0.0
FL-Next: sp=Pentatricopeptide repeat-containing protein At1g26460, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
uagpf_v2_unigene2772 uagpf v2.0 1126
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RQZ0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing 0.0
C-terminus
uagpf_v2_unigene2804 uagpf v2.0 464
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKE6_VITVI 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein breast cancer susceptibility 1 homolog 1.18593e-28
Putative N-terminus
uagpf_v2_unigene2846 uagpf v2.0 633
AutoFact: Callose synthase 3 n=2 Tax=Arabidopsis thaliana RepID=CALS3_ARATH 0.0
FL-Next: sp=Callose synthase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: callose synthase 0.0
Internal
uagpf_v2_unigene2893 uagpf v2.0 803
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9FZD1.1|PPR58_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g26460, mitochondrial; Flags: Precursor gb|AAF98572.1|AC013427_15 Contains similarity to a hypothetical 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Putative N-terminus
uagpf_v2_unigene3039 uagpf v2.0 917
AutoFact: protein kinase-like protein [Arabidopsis thaliana] gb|AAF87863.1|AC022520_7 similar to cdc2 protein kinase [Arabidopsis thaliana] gb|AEE32884.1| protein kinase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=F8L10.9 protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable serine threonine-protein kinase at1g54610-like 0.0
C-terminus
uagpf_v2_unigene3320 uagpf v2.0 411
AutoFact: cell division protease ftsH-11 [Arabidopsis thaliana] sp|Q9FGM0.1|FTSHB_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial; Short=AtFTSH11; Flags: Precursor dbj|BAB08420.1| cell division protein FtsH protease-like 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
C-terminus
uagpf_v2_unigene3335 uagpf v2.0 409
AutoFact: CBL-interacting protein kinase 3 n=8 Tax=rosids RepID=A0MNJ1_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cbl-interacting serine threonine-protein 0.0
Internal
uagpf_v2_unigene3372 uagpf v2.0 553
AutoFact: PLAC8 family protein [Arabidopsis thaliana] gb|AAU44540.1| hypothetical protein AT5G05350 [Arabidopsis thaliana] gb|AED90862.1| PLAC8 family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: plac8 family protein 0.0
Putative C-terminus
uagpf_v2_unigene3409 uagpf v2.0 816
AutoFact: putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transferring glycosyl 0.0
Putative Complete
uagpf_v2_unigene3421 uagpf v2.0 551
AutoFact: DYW8 protein (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q9M4P5_ARATH 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 2.485e-19
Putative N-terminus
uagpf_v2_unigene3615 uagpf v2.0 687
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S2U8_RICCO 8.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
N-terminus
uagpf_v2_unigene3769 uagpf v2.0 744
AutoFact: metallo-beta-lactamase domain-containing protein [Arabidopsis thaliana] gb|AAR24228.1| At1g30300 [Arabidopsis thaliana] gb|AAR92355.1| At1g30300 [Arabidopsis thaliana] gb|AEE31204.1| metallo-beta-lactamase domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: hydrolase-like protein 0.0
C-terminus
uagpf_v2_unigene3839 uagpf v2.0 726
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9FME4.1|PP438_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g60960, mitochondrial; Flags: Precursor dbj|BAB10645.1| unnamed protein product [Arabidopsis thaliana] 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Putative coding
uagpf_v2_unigene3878 uagpf v2.0 752
AutoFact: Cell division protein ftsH, putative n=1 Tax=Ricinus communis RepID=B9RQG8_RICCO 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: like protein 0.0
Putative N-terminus
uagpf_v2_unigene3960 uagpf v2.0 509
AutoFact: Kinesin, motor region [Medicago truncatula] 4.0e-10
FL-Next: sp=125 kDa kinesin-related protein; Nicotiana tabacum (Common tobacco). 0.0
Blast2go: 125 kda kinesin-related 6.54951e-11
Putative N-terminus
uagpf_v2_unigene4053 uagpf v2.0 883
AutoFact: RecName: Full=125 kDa kinesin-related protein dbj|BAA23159.1| TKRP125 [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 125 kda kinesin-related 0.0
C-terminus
uagpf_v2_unigene4063 uagpf v2.0 1170
AutoFact: Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein [Arabidopsis thaliana] emb|CAB38305.1| ribosomal-like protein [Arabidopsis thaliana] emb|CAB80431.1| ribosomal-like protein [Arabidopsis thaliana] gb|AAL67122.1| AT4g37660/F19F18_150 [Arabi 7.0e-32
FL-Next: sp=50S ribosomal protein L12, chloroplastic; Porphyra yezoensis. Plastid; Chloroplast. 0.0
Blast2go: 50s ribosomal protein l7 l12-like 1.4013e-45
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain