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Assembly Name: uagpf v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene1533 uagpf v2.0 659
AutoFact: S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] dbj|BAB10552.1| unnamed protein product [Arabidopsis thaliana] gb|AED97704.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protei 7.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene1583 uagpf v2.0 651
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230 gb|AAC98044.1| unknown protein [Arabidopsis thaliana] gb|AAO64144.1| unknown protein [Arabidopsi 4.0e-37
Blast2go: pentatricopeptide repeat-containing protein 1.4013e-45
Putative coding
uagpf_v2_unigene1663 uagpf v2.0 262
AutoFact: DUF296 domain containing protein 3.0e-25
Blast2go: dna-binding protein escarola-like 7.31837e-29
unknown
uagpf_v2_unigene1828 uagpf v2.0 472
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
C-terminus
uagpf_v2_unigene1873 uagpf v2.0 422
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAA77766.1| FAS2 [Arabidopsis thaliana] dbj|BAB11430.1| FAS2 [Arabidopsis thaliana] gb|AED97930.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Protein HIRA; Zea mays (Maize). 0.0
Blast2go: transducin wd40 domain-containing protein 0.0
Internal
uagpf_v2_unigene1918 uagpf v2.0 587
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71060, mitochondrial; Flags: Precursor gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Ar 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing 0.0
C-terminus
uagpf_v2_unigene1927 uagpf v2.0 936
AutoFact: XLG1, extra-large G protein n=2 Tax=Selaginella moellendorffii RepID=D8QZS9_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: extra-large g protein 0.0
Putative Complete
uagpf_v2_unigene1932 uagpf v2.0 813
AutoFact: ribosomal protein L7/L12 domain-containing protein [Arabidopsis thaliana] ref|NP_001185360.1| ribosomal protein L7/L12 domain-containing protein [Arabidopsis thaliana] gb|AAK25833.1|AF360123_1 unknown protein [Arabidopsis thaliana] gb|AAB61098.1| Similar 4.0e-12
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 1.02261e-19
C-terminus
uagpf_v2_unigene1999 uagpf v2.0 689
AutoFact: alpha-amylase-like 3 [Arabidopsis thaliana] gb|AAK91414.1| At1g69830/T17F3_14 [Arabidopsis thaliana] gb|AAN18209.1| At1g69830/T17F3_14 [Arabidopsis thaliana] gb|AEE34983.1| alpha-amylase-like 3 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: alpha-amylase isozyme 3d 0.0
C-terminus
uagpf_v2_unigene2040 uagpf v2.0 727
AutoFact: regulatory associated protein of mTOR [Arabidopsis thaliana] sp|Q93YQ1.1|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gb|AAL24320.1| Unknown protein [Ar 0.0
FL-Next: sp=Regulatory-associated protein of TOR 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: regulatory-associated protein of tor 1-like 0.0
C-terminus
uagpf_v2_unigene2045 uagpf v2.0 528
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 3.97329e-32
Putative N-terminus
uagpf_v2_unigene2059 uagpf v2.0 1094
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S1R1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein mitochondrial-like 0.0
Putative C-terminus
uagpf_v2_unigene2192 uagpf v2.0 529
AutoFact: MATE efflux family protein [Arabidopsis thaliana] sp|Q9SYD6.2|MATE1_ARATH RecName: Full=MATE efflux family protein 1; AltName: Full=Aluminum-activated citrate transporter; AltName: Full=FRD-like protein; AltName: Full=MATE citrate transporter; AltName: Fu 0.0
FL-Next: sp=MATE efflux family protein FRD3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: mate efflux family protein 0.0
Internal
uagpf_v2_unigene2268 uagpf v2.0 819
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070 gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07259.1| pentatricopeptide repe 6.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 6.58264e-22
C-terminus
uagpf_v2_unigene2377 uagpf v2.0 662
AutoFact: CBL-interacting protein kinase 5 n=3 Tax=Oryza sativa RepID=CIPK5_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cbl-interacting serine threonine-protein kinase 12-like 0.0
Internal
uagpf_v2_unigene2392 uagpf v2.0 1483
AutoFact: polygalacturonase [Cucumis sativus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase 0.0
C-terminus
uagpf_v2_unigene2428 uagpf v2.0 500
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q5XET4.1|PP142_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01860; AltName: Full=Protein EMBRYO DEFECTIVE 975 gb|AAU95418.1| At2g01860 [Arabidopsis thaliana] gb|A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
uagpf_v2_unigene2449 uagpf v2.0 644
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71060, mitochondrial; Flags: Precursor gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Ar 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing 4.20494e-39
Putative C-terminus
uagpf_v2_unigene2529 uagpf v2.0 769
AutoFact: CBL-interacting protein kinase 5 n=3 Tax=Oryza sativa RepID=CIPK5_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cbl-interacting serine threonine-protein kinase 12-like 0.0
N-terminus
uagpf_v2_unigene2550 uagpf v2.0 530
AutoFact: Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein [Arabidopsis thaliana] emb|CAB38305.1| ribosomal-like protein [Arabidopsis thaliana] emb|CAB80431.1| ribosomal-like protein [Arabidopsis thaliana] gb|AAL67122.1| AT4g37660/F19F18_150 [Arabi 7.0e-32
Blast2go: 50s ribosomal protein l7 l12-like 1.4013e-45
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain