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Assembly Name: uagpf v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene11760 uagpf v2.0 1148
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gb|AAF79432.1|AC025808_14 F18O14.27 [Arabidopsis thaliana] gb|AEE29863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Complete
uagpf_v2_unigene11992 uagpf v2.0 599
AutoFact: DUF296 domain containing protein 1.0e-35
Blast2go: dna-binding protein escarola-like 0.0
Putative coding
uagpf_v2_unigene12126 uagpf v2.0 1018
AutoFact: MtN3_slv domain containing protein 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bidirectional sugar transporter sweet4-like 0.0
Complete
uagpf_v2_unigene12298 uagpf v2.0 414
AutoFact: Pentatricopeptide, putative n=3 Tax=Oryza sativa RepID=Q10MA5_ORYSJ 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein mitochondrial-like 2.48619e-13
C-terminus
uagpf_v2_unigene12411 uagpf v2.0 772
AutoFact: Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 n=1 Tax=Populus trichocarpa RepID=MTBC_POPTR 0.0
FL-Next: sp=Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: probable bifunctional methylthioribulose-1-phosphate dehydratase enolase-phosphatase e1-like 0.0
C-terminus
uagpf_v2_unigene12433 uagpf v2.0 406
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
uagpf_v2_unigene12487 uagpf v2.0 1013
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9FZD1.1|PPR58_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g26460, mitochondrial; Flags: Precursor gb|AAF98572.1|AC013427_15 Contains similarity to a hypothetical 0.0
FL-Next: sp=Pentatricopeptide repeat-containing protein At1g26460, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Putative N-terminus
uagpf_v2_unigene12561 uagpf v2.0 662
AutoFact: putative thiamine biosythesis protein ThiC [Poa secunda] 0.0
FL-Next: tr=Thiamine biosynthesis protein ThiC variant L1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Blast2go: thiamine biosynthesis protein 0.0
N-terminus
uagpf_v2_unigene13007 uagpf v2.0 720
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170 emb|CAB36791.1| putative protein [Arabidopsis thaliana] emb|CAB80034.1| putative protein [Arabid 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein chloroplastic-like 0.0
C-terminus
uagpf_v2_unigene13089 uagpf v2.0 485
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S1R1_RICCO 0.0
Blast2go: pentatricopeptide repeat-containing protein mitochondrial-like 0.0
unknown
uagpf_v2_unigene13273 uagpf v2.0 649
AutoFact: pentatricopeptide repeat protein [Oryza sativa Japonica Group] gb|EAZ14485.1| hypothetical protein OsJ_04408 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: os01g67210-like protein 0.0
Internal
uagpf_v2_unigene13512 uagpf v2.0 352
AutoFact: Protein SUPPRESSOR OF GENE SILENCING 3 n=1 Tax=Solanum lycopersicum RepID=SGS3_SOLLC 0.0
Blast2go: protein suppressor of gene silencing 3-like 0.0
Coding
uagpf_v2_unigene13610 uagpf v2.0 987
AutoFact: Eukaryotic initiation factor iso4G n=1 Tax=Carica papaya RepID=E3V0I0_CARPA 0.0
FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
Blast2go: eukaryotic translation initiation factor 4 gamma 0.0
N-terminus
uagpf_v2_unigene13638 uagpf v2.0 606
AutoFact: S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gb|AAL86352.1| unknown protein [Arabidopsis thaliana] gb|AAM67532.1| unknown protein [Arabidopsis thaliana] gb|AEE80126.1| S-adenosyl-L-methionine-dependent methyltran 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene13671 uagpf v2.0 609
AutoFact: dgd1 suppressor 1 [Arabidopsis thaliana] gb|AAO00810.1| putative protein [Arabidopsis thaliana] gb|AAP37724.1| At5g12290 [Arabidopsis thaliana] gb|AED91788.1| dgd1 suppressor 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: nuclear control of atpase protein 0.0
C-terminus
uagpf_v2_unigene13722 uagpf v2.0 582
AutoFact: Pentatricopeptide repeat protein 79 (Fragment) n=2 Tax=Funariaceae RepID=F5CAE5_FUNHY 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein at1g20230 0.0
Putative C-terminus
uagpf_v2_unigene14180 uagpf v2.0 447
AutoFact: Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 n=1 Tax=Populus trichocarpa RepID=MTBC_POPTR 0.0
FL-Next: sp=Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; subsp. trichocarpa). 0.0
Blast2go: probable bifunctional methylthioribulose-1-phosphate dehydratase enolase-phosphatase e1-like 0.0
N-terminus
uagpf_v2_unigene14192 uagpf v2.0 655
AutoFact: genomes uncoupled 1 protein [Arabidopsis thaliana] sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gb|AAD26479.1| unknown protein [Arabidopsis thaliana] gb|AEC08542.1| genomes un 0.0
FL-Next: sp=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
C-terminus
uagpf_v2_unigene14325 uagpf v2.0 636
AutoFact: S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gb|AAL86352.1| unknown protein [Arabidopsis thaliana] gb|AAM67532.1| unknown protein [Arabidopsis thaliana] gb|AEE80126.1| S-adenosyl-L-methionine-dependent methyltran 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
uagpf_v2_unigene14371 uagpf v2.0 1455
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RJW1_RICCO 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-binding protein escarola-like 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain