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Assembly Name: uagpf v2.0

Name: RNA polymerase II, heptapeptide repeat, eukaryotic

Term: IPR000684  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene609 uagpf v2.0 1674
AutoFact: calmodulin-binding receptor-like cytoplasmic kinase 3 [Arabidopsis thaliana] gb|AAK32926.1|AF367339_1 At2g11520/F14P14.15 [Arabidopsis thaliana] gb|AAD28055.2| putative protein kinase [Arabidopsis thaliana] gb|AAM16251.1| At2g11520/F14P14.15 [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
uagpf_v2_unigene4980 uagpf v2.0 987
AutoFact: Phosphatidate cytidylyltransferase n=1 Tax=Ricinus communis RepID=B9RXC8_RICCO 0.0
FL-Next: sp=Phosphatidate cytidylyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phosphatidate cytidylyltransferase 0.0
Complete
uagpf_v2_unigene6916 uagpf v2.0 461
AutoFact: protein kinase family protein [Arabidopsis thaliana] dbj|BAB02454.1| unnamed protein product [Arabidopsis thaliana] gb|AAU94380.1| At3g19300 [Arabidopsis thaliana] gb|AAV59270.1| At3g19300 [Arabidopsis thaliana] gb|AEE76221.1| protein kinase family protei 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable receptor-like protein kinase at1g49730-like 0.0
Putative C-terminus
uagpf_v2_unigene8613 uagpf v2.0 388
AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii largest subunit 0.0
Internal
uagpf_v2_unigene9374 uagpf v2.0 1132
AutoFact: calmodulin-binding receptor-like cytoplasmic kinase 2 [Arabidopsis thaliana] sp|Q8VZJ9.1|Y4330_ARATH RecName: Full=Probable leucine-rich repeat receptor-like protein kinase At4g00330 gb|AAL36420.1| unknown protein [Arabidopsis thaliana] gb|AAM91688.1| unk 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable leucine-rich repeat receptor-like protein kinase at4g00330-like 0.0
C-terminus
uagpf_v2_unigene10164 uagpf v2.0 295
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TI03_VITVI 2.0e-39
FL-Next: sp=DNA-directed RNA polymerase; Pinus pinaster (Maritime pine). Plastid; Chloroplast. 0.0
Blast2go: dna-directed rna polymerase i subunit rpa1-like 1.4013e-45
Internal
uagpf_v2_unigene11567 uagpf v2.0 787
AutoFact: calmodulin-binding receptor-like cytoplasmic kinase 2 [Arabidopsis thaliana] sp|Q8VZJ9.1|Y4330_ARATH RecName: Full=Probable leucine-rich repeat receptor-like protein kinase At4g00330 gb|AAL36420.1| unknown protein [Arabidopsis thaliana] gb|AAM91688.1| unk 0.0
Blast2go: probable leucine-rich repeat receptor-like protein kinase at4g00330-like 0.0
unknown
uagpf_v2_unigene12404 uagpf v2.0 618
AutoFact: WAK-like kinase [Solanum lycopersicum] 0.0
Blast2go: wall-associated receptor kinase-like 14-like 0.0
unknown
uagpf_v2_unigene13204 uagpf v2.0 618
AutoFact: rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gb|AEE28513.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene13974 uagpf v2.0 992
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 3.9937e-43
Blast2go: dna-directed rna polymerase 0.0
Coding
uagpf_v2_unigene14774 uagpf v2.0 663
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_89.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SMT7_VITVI 7.00005e-41
FL-Next: sp=Reticuline oxidase-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Putative C-terminus
uagpf_v2_unigene15594 uagpf v2.0 675
AutoFact: PREDICTED: similar to cAMP response element-binding protein 5 n=1 Tax=Hydra magnipapillata RepID=UPI0001925AA1 2.0e-07
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: camp response element-binding protein 5 5.12823e-09
Internal
uagpf_v2_unigene18130 uagpf v2.0 1353
AutoFact: DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
uagpf_v2_unigene26729 uagpf v2.0 399
AutoFact: receptor protein kinase-like [Oryza sativa Japonica Group] 3.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 4.90454e-44
C-terminus
uagpf_v2_unigene26973 uagpf v2.0 520
AutoFact: Similar to protein serine/threonine kinase NPK15 gb|D31737 from Nicotiana tabacum [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp binding 0.0
Putative Complete
uagpf_v2_unigene27967 uagpf v2.0 626
AutoFact: rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gb|AEE28513.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene30937 uagpf v2.0 310
AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase ii subunit rpb1-like 0.0
N-terminus
uagpf_v2_unigene31781 uagpf v2.0 401
AutoFact: rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gb|AEE28513.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene33821 uagpf v2.0 151
AutoFact: Phosphatidate cytidylyltransferase n=1 Tax=Ricinus communis RepID=B9RXC8_RICCO 0.0
Blast2go: phosphatidate cytidylyltransferase 0.0
unknown
uagpf_v2_unigene34901 uagpf v2.0 168
AutoFact: Phosphatidate cytidylyltransferase n=1 Tax=Ricinus communis RepID=B9RXC8_RICCO 0.0
FL-Next: sp=Phosphatidate cytidylyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: phosphatidate cytidylyltransferase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain