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Assembly Name: uagpf v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene38608 uagpf v2.0 332
AutoFact: Putative gag-pol polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6UUN3_ORYSJ 5.0e-23
FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
Blast2go: retrotransposon ty3-gypsy subclass 4.03299e-27
Internal
uagpf_v2_unigene38729 uagpf v2.0 492
AutoFact: RVT_1 domain containing protein 2.0e-09
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 0.0
Putative Complete
uagpf_v2_unigene38760 uagpf v2.0 308
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: hypothetical protein VITISV_003687 [Vitis vinifera] 1.28498e-22
Internal
uagpf_v2_unigene39117 uagpf v2.0 461
AutoFact: Receptor-like protein kinase n=2 Tax=Glycine max RepID=C6ZRW9_SOYBN 0.0
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: leucine-rich receptor-like protein kinase bam1 0.0
Internal
uagpf_v2_unigene39336 uagpf v2.0 494
AutoFact: Lipid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S1J0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: enhanced disease resistance 2 protein 0.0
Internal
uagpf_v2_unigene39375 uagpf v2.0 322
AutoFact: Retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Oryza sativa Japonica Group RepID=Q53KP3_ORYSJ 3.0e-18
FL-Next: tr=OSJNBa0074B10.8 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 3.52891e-21
Internal
uagpf_v2_unigene39442 uagpf v2.0 485
AutoFact: pfam00665, rve, Integrase core domain 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
uagpf_v2_unigene39569 uagpf v2.0 465
AutoFact: Gag-pol polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3Y5_SOLDE 8.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 2.76797e-32
C-terminus
uagpf_v2_unigene39633 uagpf v2.0 416
AutoFact: CCAAT-binding transcription factor [Medicago truncatula] 6.0e-35
Blast2go: nuclear transcription factor y subunit a-1 0.0
Putative coding
uagpf_v2_unigene39660 uagpf v2.0 245
AutoFact: cytochrome P450 86B1 [Arabidopsis thaliana] sp|Q9FMY1.1|C86B1_ARATH RecName: Full=Cytochrome P450 86B1 gb|AAK29622.1|AF345898_1 CYP86B1 [Arabidopsis thaliana] dbj|BAB11174.1| cytochrome P450-like protein [Arabidopsis thaliana] gb|AAN72056.1| cytochrome P4 6.00036e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cytochrome p450 0.0
Internal
uagpf_v2_unigene39912 uagpf v2.0 282
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100854191 2.09151e-18
Putative C-terminus
uagpf_v2_unigene40381 uagpf v2.0 417
AutoFact: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SA61_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exostosin family protein 0.0
Internal
uagpf_v2_unigene40501 uagpf v2.0 300
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y0A9_ORYSJ 3.0e-17
FL-Next: tr=Putative retroelement; Oryza sativa (Rice). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 1.66354e-20
Internal
uagpf_v2_unigene40668 uagpf v2.0 411
AutoFact: Putative gag-pol polyprotein, identical n=2 Tax=Solanum demissum RepID=Q5NRP4_SOLDE 2.0e-21
FL-Next: tr=Putative gag-pol polyprotein, identical; Solanum demissum (Wild potato). 0.0
Blast2go: uncharacterized protein partial 3.32395e-21
Internal
uagpf_v2_unigene40797 uagpf v2.0 385
AutoFact: LRR receptor-like serine/threonine-protein kinase EFR [Arabidopsis thaliana] sp|C0LGT6.1|EFR_ARATH RecName: Full=LRR receptor-like serine/threonine-protein kinase EFR; AltName: Full=Elongation factor Tu receptor; Short=EF-Tu receptor; Flags: Precursor gb| 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 3.85796e-40
N-terminus
uagpf_v2_unigene41094 uagpf v2.0 417
AutoFact: Retrotransposon protein, putative, Ty3-gypsy sub-class n=2 Tax=Oryza sativa Japonica Group RepID=Q53KQ8_ORYSJ 4.0e-22
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy sub-class; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 2.93551e-25
Internal
uagpf_v2_unigene41271 uagpf v2.0 361
AutoFact: Receptor-like protein kinase n=2 Tax=Glycine max RepID=C6ZRW9_SOYBN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: leucine-rich receptor-like protein kinase bam1 0.0
Internal
uagpf_v2_unigene41557 uagpf v2.0 422
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 3.0e-32
FL-Next: tr=Integrase; subsp. trichocarpa). 0.0
Blast2go: gag protein 5.86802e-32
Internal
uagpf_v2_unigene41562 uagpf v2.0 212
AutoFact: PREDICTED: similar to pol polyprotein, partial n=1 Tax=Nasonia vitripennis RepID=UPI00015B4525 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lectin receptor kinase 2.79972e-26
N-terminus
uagpf_v2_unigene41676 uagpf v2.0 390
AutoFact: OSIGBa0101K10.6 protein n=1 Tax=Oryza sativa RepID=Q01MA8_ORYSA 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 4.0216e-26
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain