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Assembly Name: uagpf v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene35423 uagpf v2.0 230
AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: integrase 1.36968e-32
Internal
uagpf_v2_unigene35859 uagpf v2.0 431
AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 1.4013e-45
Complete
uagpf_v2_unigene35937 uagpf v2.0 325
AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 0.0
FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
uagpf_v2_unigene35945 uagpf v2.0 432
AutoFact: putative reverse-transcriptase-like protein [Arabidopsis thaliana] emb|CAB78181.1| putative reverse-transcriptase-like protein [Arabidopsis thaliana] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse-transcriptase-like protein 3.63293e-32
Putative Complete
uagpf_v2_unigene35988 uagpf v2.0 376
AutoFact: PREDICTED: similar to pol polyprotein, partial n=1 Tax=Nasonia vitripennis RepID=UPI00015B4525 2.0e-23
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: lectin receptor kinase 2.79972e-26
Internal
uagpf_v2_unigene36284 uagpf v2.0 601
AutoFact: Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana] sp|Q9FZ45.1|Y1686_ARATH RecName: Full=Uncharacterized membrane protein At1g16860 gb|AAF99847.1|AC051629_14 Unknown protein [Arabidopsis thaliana] gb|AAK92824.1| unknown protein 0.0
Blast2go: uncharacterized membrane protein at1g16860-like 0.0
unknown
uagpf_v2_unigene36474 uagpf v2.0 469
AutoFact: UDP-glucose dehydrogenase n=3 Tax=Oryza sativa RepID=Q75GS4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: udp-glucose dehydrogenase 0.0
C-terminus
uagpf_v2_unigene36834 uagpf v2.0 426
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q10NE5_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Putative C-terminus
uagpf_v2_unigene36889 uagpf v2.0 461
AutoFact: Putative retrotransposon polyprotein n=1 Tax=Ipomoea batatas RepID=Q5MG92_IPOBA 4.0e-28
FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Blast2go: gag-pol polyprotein 7.86207e-38
Internal
uagpf_v2_unigene36915 uagpf v2.0 448
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: disease resistance protein 1.14123e-36
C-terminus
uagpf_v2_unigene36920 uagpf v2.0 506
AutoFact: Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9T173_RICCO 0.0
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: receptor-like protein kinase 0.0
Internal
uagpf_v2_unigene37217 uagpf v2.0 402
AutoFact: S15/NS1, RNA-binding protein [Arabidopsis thaliana] gb|AAF82151.1|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi|6730725 from Arabidopsis thaliana BAC T21F11 gb|AC018849 and contains a Ribosomal Protein S15 PF|00312 domain gb|AAK32782.1 0.0
FL-Next: tr=Structural constituent of ribosome, putative; Ricinus communis (Castor bean). 0.0
Blast2go: s15 rna-binding protein 0.0
C-terminus
uagpf_v2_unigene37544 uagpf v2.0 437
AutoFact: Mutant gag-pol polyprotein n=2 Tax=Pisum sativum RepID=E7BQD6_PEA 5.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: gag-pol polyprotein 6.43147e-27
Internal
uagpf_v2_unigene37638 uagpf v2.0 415
AutoFact: Glycerophosphoryl diester phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9SSQ8_RICCO 0.0
FL-Next: sp=Probable glycerophosphoryl diester phosphodiesterase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: glycerophosphoryl diester phosphodiesterase family protein 0.0
Internal
uagpf_v2_unigene37690 uagpf v2.0 344
AutoFact: Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU 3.0e-14
FL-Next: tr=Retrotransposon protein; Beta vulgaris (Sugar beet). 0.0
Blast2go: cellular nucleic acid-binding protein 1.78368e-16
Internal
uagpf_v2_unigene37863 uagpf v2.0 437
AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 1.0e-39
Blast2go: nuclear transcription factor y subunit a-9-like 0.0
unknown
uagpf_v2_unigene38043 uagpf v2.0 310
AutoFact: Glycerophosphoryl diester phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9SSQ8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycerophosphoryl diester phosphodiesterase family protein 0.0
Internal
uagpf_v2_unigene38225 uagpf v2.0 343
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100259900 7.82995e-30
Internal
uagpf_v2_unigene38389 uagpf v2.0 470
AutoFact: oligoribonuclease [Arabidopsis thaliana] dbj|BAH19818.1| AT2G26970 [Arabidopsis thaliana] gb|AEC07913.1| oligoribonuclease [Arabidopsis thaliana] 0.0
FL-Next: sp=Oligoribonuclease; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: oligoribonuclease 0.0
C-terminus
uagpf_v2_unigene38499 uagpf v2.0 346
AutoFact: Receptor-like protein kinase n=2 Tax=Glycine max RepID=C6ZRW9_SOYBN 0.0
Blast2go: leucine-rich receptor-like protein kinase bam1 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain