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Assembly Name: uagpf v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene32212 uagpf v2.0 424
AutoFact: OSJNBa0017P10.4 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XQ51_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 0.0
Putative Complete
uagpf_v2_unigene32222 uagpf v2.0 442
AutoFact: gag/pol polyprotein [Pisum sativum] 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100797050 0.0
Internal
uagpf_v2_unigene32278 uagpf v2.0 394
AutoFact: Receptor serine/threonine kinase, putative n=1 Tax=Ricinus communis RepID=B9RIJ3_RICCO 4.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable receptor-like protein kinase at5g39020-like 1.99e-36
Internal
uagpf_v2_unigene32335 uagpf v2.0 459
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: hypothetical protein VITISV_042009 [Vitis vinifera] 0.0
Putative C-terminus
uagpf_v2_unigene32444 uagpf v2.0 353
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QTQ7_ORYSJ 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Internal
uagpf_v2_unigene32834 uagpf v2.0 203
AutoFact: putative methyltransferase PMT6 [Arabidopsis thaliana] sp|Q84TJ0.1|PMT6_ARATH RecName: Full=Probable methyltransferase PMT6 gb|AAO64151.1| unknown protein [Arabidopsis thaliana] dbj|BAF00512.1| hypothetical protein [Arabidopsis thaliana] gb|AEE74871.1| pu 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable methyltransferase pmt7-like 0.0
Internal
uagpf_v2_unigene32867 uagpf v2.0 323
AutoFact: RVT_2 domain containing protein 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 3.13617e-26
Putative N-terminus
uagpf_v2_unigene33110 uagpf v2.0 353
AutoFact: Putative polyprotein n=1 Tax=Solanum habrochaites RepID=B3TPP6_SOLHA 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ac079131_10 copia-type 3.62119e-28
Putative N-terminus
uagpf_v2_unigene33385 uagpf v2.0 449
AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 0.0
FL-Next: tr=Putative reverse transcriptase; Petunia hybrida (Petunia). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
uagpf_v2_unigene33804 uagpf v2.0 368
AutoFact: LRR receptor-like serine/threonine-protein kinase EFR [Arabidopsis thaliana] sp|C0LGT6.1|EFR_ARATH RecName: Full=LRR receptor-like serine/threonine-protein kinase EFR; AltName: Full=Elongation factor Tu receptor; Short=EF-Tu receptor; Flags: Precursor gb| 1.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine-threonine protein plant- 4.24958e-41
Internal
uagpf_v2_unigene34019 uagpf v2.0 474
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 2.0e-27
FL-Next: tr=Integrase, catalytic region; Ribonuclease H; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Blast2go: retrotransposon unclassified 5.18466e-31
Internal
uagpf_v2_unigene34106 uagpf v2.0 263
AutoFact: Gag-pol polyprotein (Fragment) n=1 Tax=Panicum virgatum RepID=A4GMN4_9POAL 4.0e-13
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: gag-pol polyprotein 7.54011e-17
Putative C-terminus
uagpf_v2_unigene34200 uagpf v2.0 420
AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
uagpf_v2_unigene34326 uagpf v2.0 197
AutoFact: Unassigned protein
Blast2go: receptor-like protein kinase 2.3249e-28
unknown
uagpf_v2_unigene34487 uagpf v2.0 224
AutoFact: glycerol-3-phosphate acyltransferase [Arabidopsis thaliana] sp|Q9LMM0.1|GPAT4_ARATH RecName: Full=Glycerol-3-phosphate acyltransferase 4; Short=AtGPAT4 gb|AAF81319.1|AC061957_15 Contains similarity to a hypothetical protein F16M14.4 gi|7485589 from Arabid 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: er glycerol-phosphate acyltransferase 0.0
Internal
uagpf_v2_unigene34569 uagpf v2.0 286
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2RB45_ORYSJ 3.0e-20
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon ty3-gypsy subclass 1.09859e-23
Internal
uagpf_v2_unigene34675 uagpf v2.0 300
AutoFact: PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Vitis vinifera RepID=UPI000198569A 6.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: retrotransposon protein 8.54214e-22
Internal
uagpf_v2_unigene34737 uagpf v2.0 393
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 3.01564e-32
Complete
uagpf_v2_unigene34875 uagpf v2.0 268
AutoFact: Pol protein (Fragment) n=2 Tax=Picea abies RepID=Q9M6P0_PICAB 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pol protein 8.61406e-21
Internal
uagpf_v2_unigene34941 uagpf v2.0 393
AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 4.0e-35
FL-Next: tr=Pol protein; Cucumis melo subsp. melo. 0.0
Blast2go: retrotransposon ty3-gypsy subclass 1.68007e-40
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain