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Assembly Name: uagpf v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene20470 uagpf v2.0 349
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 8.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 1.96182e-44
Putative Complete
uagpf_v2_unigene25019 uagpf v2.0 508
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
Blast2go: retrotransposon unclassified 0.0
unknown
uagpf_v2_unigene25122 uagpf v2.0 562
AutoFact: Glycerophosphoryl diester phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9SSQ8_RICCO 0.0
Blast2go: glycerophosphoryl diester phosphodiesterase family protein 0.0
Coding
uagpf_v2_unigene25194 uagpf v2.0 483
AutoFact: vesicle-associated membrane protein-associated protein [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: vesicle-associated membrane 0.0
N-terminus
uagpf_v2_unigene25381 uagpf v2.0 669
AutoFact: gag/pol polyprotein [Pisum sativum] 9.99995e-41
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: uncharacterized protein loc100797050 0.0
Putative Complete
uagpf_v2_unigene25783 uagpf v2.0 592
AutoFact: RVT_2 domain containing protein 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 0.0
C-terminus
uagpf_v2_unigene25795 uagpf v2.0 407
AutoFact: Mutant gag-pol polyprotein n=2 Tax=Pisum sativum RepID=E7BQD6_PEA 4.0e-29
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: gag-pol polyprotein 6.24199e-34
C-terminus
uagpf_v2_unigene26373 uagpf v2.0 248
AutoFact: Dimer_Tnp_hAT domain containing protein 8.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 1.02347e-36
Internal
uagpf_v2_unigene26403 uagpf v2.0 575
AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 3.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene26480 uagpf v2.0 599
AutoFact: CemA-like proton extrusion protein-like protein [Arabidopsis thaliana] gb|AAL85996.1| unknown protein [Arabidopsis thaliana] gb|AAP04130.1| unknown protein [Arabidopsis thaliana] dbj|BAD43184.1| unknown protein [Arabidopsis thaliana] dbj|BAD43308.1| unkno 0.0
FL-Next: sp=Chloroplast envelope membrane protein; Cyanidium caldarium. Plastid; Chloroplast. 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene26641 uagpf v2.0 601
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: catalytic region ribonuclease h 9.62819e-37
Putative Complete
uagpf_v2_unigene26713 uagpf v2.0 291
AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 2.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 1.09305e-40
Internal
uagpf_v2_unigene26806 uagpf v2.0 582
AutoFact: oligoribonuclease [Arabidopsis thaliana] sp|Q9ZVE0.2|ORN_ARATH RecName: Full=Oligoribonuclease gb|AAL36387.1| unknown protein [Arabidopsis thaliana] gb|AAN71962.1| unknown protein [Arabidopsis thaliana] gb|AEC07912.1| oligoribonuclease [Arabidopsis thalia 0.0
Blast2go: oligoribonuclease 0.0
unknown
uagpf_v2_unigene27214 uagpf v2.0 360
AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 0.0
FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
uagpf_v2_unigene27313 uagpf v2.0 391
AutoFact: putative protein kinase Xa21 D, receptor type [Oryza sativa Japonica Group] dbj|BAD19219.1| putative protein kinase Xa21 D, receptor type [Oryza sativa Japonica Group] 2.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.27775e-40
Putative N-terminus
uagpf_v2_unigene27342 uagpf v2.0 261
AutoFact: RVT_2 domain containing protein 1.0e-14
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Blast2go: copia-type polyprotein 0.0
C-terminus
uagpf_v2_unigene27374 uagpf v2.0 392
AutoFact: Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SLE0_RICCO 4.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine-threonine protein plant- 3.71344e-43
N-terminus
uagpf_v2_unigene27541 uagpf v2.0 511
AutoFact: Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana] sp|Q9FZ45.1|Y1686_ARATH RecName: Full=Uncharacterized membrane protein At1g16860 gb|AAF99847.1|AC051629_14 Unknown protein [Arabidopsis thaliana] gb|AAK92824.1| unknown protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized membrane protein at1g16860-like 0.0
N-terminus
uagpf_v2_unigene27624 uagpf v2.0 192
AutoFact: glycerol-3-phosphate acyltransferase 6 [Arabidopsis thaliana] sp|O80437.1|GPAT6_ARATH RecName: Full=Glycerol-3-phosphate acyltransferase 6; Short=AtGPAT6 gb|AAC27160.1| unknown protein [Arabidopsis thaliana] gb|AAL32799.1| Unknown protein [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene27875 uagpf v2.0 443
AutoFact: HAT family dimerization domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4KHA1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hat family dimerization domain-containing protein 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain