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Assembly Name: uagpf v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene51772 uagpf v2.0 379
AutoFact: OSJNBa0017P10.4 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XQ51_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative Complete
uagpf_v2_unigene51962 uagpf v2.0 413
AutoFact: Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gb|AEE31438.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein iws1 homolog 0.0
N-terminus
uagpf_v2_unigene52169 uagpf v2.0 336
AutoFact: WS0346.C21_E20 WS-SE-N-A-19 Picea glauca cDNA clone WS0346_E20 3, mRNA sequence. 0.0
FL-Next: tr=Similar to Arabidopsis thaliana chromosome II BAC F26H6; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: uncharacterized protein loc100853628 3.02899e-28
Internal
uagpf_v2_unigene52220 uagpf v2.0 345
AutoFact: DUF1336 domain containing protein 0.0
Blast2go: lipid binding 0.0
unknown
uagpf_v2_unigene52303 uagpf v2.0 404
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q60ET2_ORYSJ 7.00649e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 0.0
Putative Complete
uagpf_v2_unigene52326 uagpf v2.0 418
AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative N-terminus
uagpf_v2_unigene52366 uagpf v2.0 304
AutoFact: Putative reverse-transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9T0B7_ARATH 4.0e-16
FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Blast2go: pol polyprotein 5.31977e-20
Putative N-terminus
uagpf_v2_unigene52492 uagpf v2.0 241
AutoFact: F5K24.1 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZPF9_ARATH 7.0e-26
Blast2go: gag-pol polyprotein 3.29e-29
unknown
uagpf_v2_unigene52766 uagpf v2.0 517
AutoFact: Cf-2.1 n=3 Tax=Solanum pimpinellifolium RepID=Q41397_SOLPI 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hcr2- 6.93123e-31
Internal
uagpf_v2_unigene53438 uagpf v2.0 259
AutoFact: Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gb|AEE31438.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein iws1 homolog 0.0
C-terminus
uagpf_v2_unigene53725 uagpf v2.0 431
AutoFact: Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gb|AEE31438.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein iws1 homolog 0.0
Putative C-terminus
uagpf_v2_unigene53997 uagpf v2.0 638
AutoFact: [K] COG5224 CCAAT-binding factor, subunit B 7.0e-05
Blast2go: nuclear transcription factor y subunit a- 0.0
unknown
uagpf_v2_unigene54235 uagpf v2.0 327
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RYZ7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene54515 uagpf v2.0 291
AutoFact: Putative auxin response factor 6/8 n=1 Tax=Ginkgo biloba RepID=E1UHX7_GINBI 0.0
Blast2go: auxin response 0.0
unknown
uagpf_v2_unigene55017 uagpf v2.0 203
AutoFact: Unassigned protein
Blast2go: disease resistance protein 7.31522e-29
unknown
uagpf_v2_unigene55557 uagpf v2.0 437
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
Blast2go: retrotransposon unclassified 0.0
unknown
uagpf_v2_unigene55766 uagpf v2.0 323
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 2.0e-36
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 3.34295e-36
Internal
uagpf_v2_unigene55790 uagpf v2.0 427
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 0.0
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00850; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon unclassified 0.0
Putative Complete
uagpf_v2_unigene55821 uagpf v2.0 594
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 2.27595e-36
Internal
uagpf_v2_unigene55893 uagpf v2.0 300
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
FL-Next: tr=Putative polyprotein; Zea mays (Maize). 0.0
Blast2go: retrotransposon unclassified 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain