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Assembly Name: uagpf v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene46136 uagpf v2.0 331
AutoFact: HAT family dimerization domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4KHA1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hat family dimerization domain-containing protein 0.0
Putative N-terminus
uagpf_v2_unigene46347 uagpf v2.0 387
AutoFact: Putative polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6F2D6_SOLDE 7.0e-31
FL-Next: tr=Putative polyprotein, identical; Solanum demissum (Wild potato). 0.0
Blast2go: retrotransposon protein 1.58637e-35
Internal
uagpf_v2_unigene46371 uagpf v2.0 395
AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear transcription factor y subunit a-9-like 0.0
Internal
uagpf_v2_unigene46543 uagpf v2.0 213
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 4.71458e-36
Internal
uagpf_v2_unigene46553 uagpf v2.0 349
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 7.0e-26
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon unclassified 6.20541e-30
Putative C-terminus
uagpf_v2_unigene46702 uagpf v2.0 351
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene46959 uagpf v2.0 425
AutoFact: cytochrome P450 [Pyrus communis] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cytochrome p450 0.0
C-terminus
uagpf_v2_unigene46981 uagpf v2.0 218
AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI 2.0e-30
FL-Next: tr=RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Blast2go: pol protein integrase region 2.85279e-40
Internal
uagpf_v2_unigene46982 uagpf v2.0 339
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 4.0e-30
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 8.94806e-30
Internal
uagpf_v2_unigene47094 uagpf v2.0 300
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: reverse transcriptase 3.44548e-13
Internal
uagpf_v2_unigene47216 uagpf v2.0 418
AutoFact: rve domain containing protein 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: hypothetical protein VITISV_024821 [Vitis vinifera] 0.0
Internal
uagpf_v2_unigene47688 uagpf v2.0 440
AutoFact: Ty3-gypsy retrotransposon protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCE2_CUCME 9.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 1.61717e-23
Complete
uagpf_v2_unigene47811 uagpf v2.0 357
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: retrotransposon like protein 0.0
C-terminus
uagpf_v2_unigene47897 uagpf v2.0 271
AutoFact: RVT_1 domain containing protein 3.0e-10
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 8.96781e-34
Putative N-terminus
uagpf_v2_unigene47994 uagpf v2.0 394
AutoFact: OSIGBa0093M15.5 protein n=1 Tax=Oryza sativa RepID=Q01MK0_ORYSA 1.0e-25
FL-Next: tr=OSIGBa0093M15.5 protein; Oryza sativa (Rice). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 2.01081e-29
Internal
uagpf_v2_unigene48584 uagpf v2.0 333
AutoFact: Unassigned protein
FL-Next: tr=H0515C11.8 protein; Oryza sativa (Rice). 0.0
Blast2go: retrotransposon unclassified 6.42801e-12
Putative C-terminus
uagpf_v2_unigene48843 uagpf v2.0 317
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QS58_ORYSJ 3.0e-11
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 3.6729e-13
Internal
uagpf_v2_unigene49155 uagpf v2.0 359
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: hypothetical protein VITISV_003687 [Vitis vinifera] 1.18393e-21
Internal
uagpf_v2_unigene49178 uagpf v2.0 351
AutoFact: Gag-pol polyprotein (Fragment) n=1 Tax=Panicum virgatum RepID=A4GMN5_9POAL 5.0e-19
FL-Next: tr=Putative unclassified retrotransposon protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: gag-pol polyprotein 1.69631e-23
Internal
uagpf_v2_unigene49202 uagpf v2.0 320
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: uncharacterized protein loc100852619 9.79722e-22
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain