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Assembly Name: uagpf v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene41731 uagpf v2.0 395
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa Japonica Group RepID=Q10FX2_ORYSJ 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 1.5685e-16
N-terminus
uagpf_v2_unigene41919 uagpf v2.0 327
AutoFact: OSJNBb0049I21.5 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XRV6_ORYSJ 3.0e-22
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon ty3-gypsy subclass 4.15575e-22
Putative C-terminus
uagpf_v2_unigene41928 uagpf v2.0 436
AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 9.99967e-42
FL-Next: tr=Putative gag-pol polyprotein; Petunia hybrida (Petunia). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative C-terminus
uagpf_v2_unigene41998 uagpf v2.0 443
AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
uagpf_v2_unigene42063 uagpf v2.0 457
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=16 Tax=Magnoliophyta RepID=Q7XG23_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
uagpf_v2_unigene42100 uagpf v2.0 381
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 4.18805e-33
Internal
uagpf_v2_unigene42173 uagpf v2.0 435
AutoFact: UDP-glucose dehydrogenase n=3 Tax=Oryza sativa RepID=Q75GS4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: udp-glucose dehydrogenase 0.0
Internal
uagpf_v2_unigene42203 uagpf v2.0 330
AutoFact: Polyprotein (Fragment) n=1 Tax=Hydrangea macrophylla RepID=Q153Y8_HYDMC 5.0e-10
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Blast2go: ac079131_10 copia-type 3.23891e-12
Internal
uagpf_v2_unigene42357 uagpf v2.0 301
AutoFact: glycerol-3-phosphate acyltransferase 6 [Arabidopsis thaliana] sp|O80437.1|GPAT6_ARATH RecName: Full=Glycerol-3-phosphate acyltransferase 6; Short=AtGPAT6 gb|AAC27160.1| unknown protein [Arabidopsis thaliana] gb|AAL32799.1| Unknown protein [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene42405 uagpf v2.0 316
AutoFact: S-locus lectin protein kinase-like protein [Arabidopsis thaliana] sp|O64477.1|Y2913_ARATH RecName: Full=G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130; Flags: Precursor gb|AAD12030.1| putative receptor-like protein kinase [Arabido 0.0
FL-Next: sp=G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene42737 uagpf v2.0 405
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 1.0e-27
FL-Next: tr=Retrotransposon gag protein; Asparagus officinalis (Garden asparagus). 0.0
Blast2go: retrotransposon gag protein 2.8911e-27
Internal
uagpf_v2_unigene42831 uagpf v2.0 279
AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Ginkgo biloba RepID=Q9ARL0_GINBI 8.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pol protein integrase region 7.74644e-22
Internal
uagpf_v2_unigene42880 uagpf v2.0 359
AutoFact: Putative polyprotein (Fragment) n=1 Tax=Cicer arietinum RepID=Q949K9_CICAR 3.0e-19
FL-Next: tr=Putative polyprotein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: polyprotein 5.68225e-19
Internal
uagpf_v2_unigene42883 uagpf v2.0 301
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100854568 1.00137e-28
Internal
uagpf_v2_unigene42888 uagpf v2.0 298
AutoFact: rve domain containing protein 3.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 3.98257e-27
Internal
uagpf_v2_unigene43291 uagpf v2.0 339
AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 2.0e-29
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 2.72557e-38
Putative N-terminus
uagpf_v2_unigene43417 uagpf v2.0 149
AutoFact: Glycerophosphoryl diester phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9SSQ8_RICCO 0.0
FL-Next: sp=Probable glycerophosphoryl diester phosphodiesterase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: glycerophosphoryl diester phosphodiesterase family protein 0.0
Internal
uagpf_v2_unigene43496 uagpf v2.0 270
AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVL5_9POAL 7.0e-10
FL-Next: tr=B1292H11.7 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 2.2056e-12
Internal
uagpf_v2_unigene43872 uagpf v2.0 262
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: af378049_1reverse transcriptase 1.08763e-30
Putative Complete
uagpf_v2_unigene43927 uagpf v2.0 171
AutoFact: copia-type reverse transcriptase-like protein [Arabidopsis thaliana] 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 3.58732e-43
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain