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Assembly Name: uagpf v2.0

Name: Like-Sm ribonucleoprotein (LSM) domain

Term: IPR001163  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene18774 uagpf v2.0 836
AutoFact: Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] gb|AEE84034.1| Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein-associated protein b 4.34403e-44
Complete
uagpf_v2_unigene18814 uagpf v2.0 911
AutoFact: Putative snRNP core protein SMX5d n=1 Tax=Oryza sativa Japonica Group RepID=Q7F193_ORYSJ 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: snrnp core sm protein sm-x5-like protein 0.0
Complete
uagpf_v2_unigene19788 uagpf v2.0 918
AutoFact: small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] emb|CAB83134.1| small nuclear ribonucleoprot 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein d2 0.0
Complete
uagpf_v2_unigene28626 uagpf v2.0 438
AutoFact: Vacuolar protein sorting factor 4B-like n=4 Tax=Poaceae RepID=Q5QMP6_ORYSJ 0.0
FL-Next: tr=Katanin p60 ATPase-containing subunit, putative; Ricinus communis (Castor bean). 0.0
Blast2go: katanin p60 atpase-containing subunit a-like 2-like 0.0
N-terminus
uagpf_v2_unigene29693 uagpf v2.0 246
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIQ4_RICCO 0.0
Blast2go: p-loop containing nucleoside triphosphate hydrolase-like protein 0.0
unknown
uagpf_v2_unigene30921 uagpf v2.0 491
AutoFact: PREDICTED: LSM11, U7 small nuclear RNA associated [Danio rerio] ref|XP_003199983.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Danio rerio] 9.0e-08
Blast2go: protein 0.0
unknown
uagpf_v2_unigene32794 uagpf v2.0 436
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
uagpf_v2_unigene34427 uagpf v2.0 496
AutoFact: [O] COG0464 ATPases of the AAA+ class 1.0e-21
FL-Next: tr=Putative uncharacterized protein Sb10g001950; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: aaa-type atpase-like protein 0.0
Internal
uagpf_v2_unigene36202 uagpf v2.0 841
AutoFact: Sm-like protein [Arabidopsis thaliana] 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene38067 uagpf v2.0 536
AutoFact: Vacuolar protein sorting factor 4B-like n=4 Tax=Poaceae RepID=Q5QMP6_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: katanin p60 atpase-containing subunit a-like 2-like 0.0
Internal
uagpf_v2_unigene40497 uagpf v2.0 303
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIQ4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: p-loop containing nucleoside triphosphate hydrolase-like protein 0.0
Internal
uagpf_v2_unigene41980 uagpf v2.0 378
AutoFact: uroporphiryn-III C-methyltransferase [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: siroheme synthase-like 0.0
Putative N-terminus
uagpf_v2_unigene42937 uagpf v2.0 96
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: atp binding 0.0
Putative C-terminus
uagpf_v2_unigene43490 uagpf v2.0 208
AutoFact: BTB-POZ and math domain-containing protein [Arabidopsis thaliana] sp|Q8L765.1|BPM1_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 1; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 1; Short=AtBPM1 gb|AAM97116.1| putative protein [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene43767 uagpf v2.0 225
AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: mismatch repair endonuclease pms2-like 2.10195e-44
Internal
uagpf_v2_unigene44202 uagpf v2.0 179
AutoFact: Transitional endoplasmic reticulum ATPase-like n=3 Tax=Oryza sativa RepID=Q6YUV9_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: p-loop containing ntpase domain-containing protein 0.0
Internal
uagpf_v2_unigene46542 uagpf v2.0 185
AutoFact: Protein MSP1, putative n=1 Tax=Ricinus communis RepID=B9T1I4_RICCO 0.0
Blast2go: p-loop containing nucleoside triphosphate hydrolase domain-containing protein 0.0
unknown
uagpf_v2_unigene46567 uagpf v2.0 265
AutoFact: PREDICTED: LSM11, U7 small nuclear RNA associated [Danio rerio] ref|XP_003199983.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Danio rerio] 9.0e-08
Blast2go: protein 0.0
unknown
uagpf_v2_unigene49620 uagpf v2.0 356
AutoFact: Small nuclear ribonucleoprotein polypeptide G (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q677D4_HYAOR 2.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
uagpf_v2_unigene49797 uagpf v2.0 413
AutoFact: thiamin pyrophosphokinase1 [Arabidopsis thaliana] gb|AAL25560.1| At1g02880/F22D16_33 [Arabidopsis thaliana] gb|AAM26660.1| At1g02880/F22D16_33 [Arabidopsis thaliana] gb|AEE27488.1| thiamin pyrophosphokinase1 [Arabidopsis thaliana] 4.99997e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: thiamin pyrophosphokinase1 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain